miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 30684 0.71 0.461101
Target:  5'- uGGGUCGACGAuccggcCGGCugcggguggccgcgGUGAUCgGCGAGGa -3'
miRNA:   3'- -UCCAGCUGCU------GCUG--------------CGCUAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 30445 0.68 0.62274
Target:  5'- ---gCGAUGACGACGCcGAcCGCGAu- -3'
miRNA:   3'- uccaGCUGCUGCUGCG-CUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 30390 0.71 0.454188
Target:  5'- cAGGUCGAggcguaccuCGACGACGCGucCGCGc-- -3'
miRNA:   3'- -UCCAGCU---------GCUGCUGCGCuaGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 30245 0.7 0.494413
Target:  5'- cGGUCGACGACGGUGCgGGUC-CGGc- -3'
miRNA:   3'- uCCAGCUGCUGCUGCG-CUAGcGCUuc -5'
26388 5' -54.8 NC_005345.2 + 30223 0.81 0.111125
Target:  5'- -cGUCGACGcCGACGCGAgcCGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGCGCUa-GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 29998 0.69 0.546825
Target:  5'- cGGGccCGGCGACGACGUcccggccgaGGUCGCcGAGc -3'
miRNA:   3'- -UCCa-GCUGCUGCUGCG---------CUAGCGcUUC- -5'
26388 5' -54.8 NC_005345.2 + 29876 0.7 0.508874
Target:  5'- gAGGUgGGCGAgGACGgucgacaggugcaccCGGUCGCGGu- -3'
miRNA:   3'- -UCCAgCUGCUgCUGC---------------GCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 29692 0.66 0.751744
Target:  5'- ---aCGcCGGCGaACGCGAUCGCGc-- -3'
miRNA:   3'- uccaGCuGCUGC-UGCGCUAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 29659 0.73 0.362122
Target:  5'- aAGGUCGccguCGACGGCGUGuccaCGCGGAu -3'
miRNA:   3'- -UCCAGCu---GCUGCUGCGCua--GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 29408 0.66 0.761977
Target:  5'- cGGUgcacgCGACaGCGACGCcGAUCaGCGAu- -3'
miRNA:   3'- uCCA-----GCUGcUGCUGCG-CUAG-CGCUuc -5'
26388 5' -54.8 NC_005345.2 + 28429 0.66 0.74139
Target:  5'- cGGUCGcCGAgGGcCGCGAgauguacCGCGAGc -3'
miRNA:   3'- uCCAGCuGCUgCU-GCGCUa------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 28332 0.7 0.484198
Target:  5'- cAGGaCGACGACGAgCGCGAcaCGCGccGu -3'
miRNA:   3'- -UCCaGCUGCUGCU-GCGCUa-GCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 28260 1.08 0.001438
Target:  5'- gAGGUCGACGACGACGCGAUCGCGAAGc -3'
miRNA:   3'- -UCCAGCUGCUGCUGCGCUAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 28123 0.66 0.720366
Target:  5'- gGGGuccucUCGGCGGCGAgGgGGUaUGCGAAa -3'
miRNA:   3'- -UCC-----AGCUGCUGCUgCgCUA-GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 28088 0.66 0.74139
Target:  5'- -cGUCGAgaagaagauCGACGAgGCGGUCGCc--- -3'
miRNA:   3'- ucCAGCU---------GCUGCUgCGCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 27985 0.68 0.62274
Target:  5'- -cGUCGACgGGCGGgGCG-UCGCGuAGGg -3'
miRNA:   3'- ucCAGCUG-CUGCUgCGCuAGCGC-UUC- -5'
26388 5' -54.8 NC_005345.2 + 27950 0.67 0.713988
Target:  5'- cGG-CGACGACGACaagcccgaccacaagGcCGAggcCGCGAAGu -3'
miRNA:   3'- uCCaGCUGCUGCUG---------------C-GCUa--GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 27330 0.67 0.709719
Target:  5'- -aGUCGAUGucGCGugGCGGggCGCGGu- -3'
miRNA:   3'- ucCAGCUGC--UGCugCGCUa-GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 27316 0.69 0.589979
Target:  5'- gGGGUCGAgUGGCugaGAgGCGAUCuGCGGAc -3'
miRNA:   3'- -UCCAGCU-GCUG---CUgCGCUAG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 26753 0.69 0.546825
Target:  5'- gAGGaacUCGACGAgucccCGGCGCGggUGCGgcGg -3'
miRNA:   3'- -UCC---AGCUGCU-----GCUGCGCuaGCGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.