miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 23998 0.68 0.600876
Target:  5'- -aGUCGcCGuucguCGGCGCGAUCGCGc-- -3'
miRNA:   3'- ucCAGCuGCu----GCUGCGCUAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 26753 0.69 0.546825
Target:  5'- gAGGaacUCGACGAgucccCGGCGCGggUGCGgcGg -3'
miRNA:   3'- -UCC---AGCUGCU-----GCUGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 35940 0.71 0.434751
Target:  5'- aAGGUCGGCGGCGuCGUcAUgaGCGggGu -3'
miRNA:   3'- -UCCAGCUGCUGCuGCGcUAg-CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 43510 0.75 0.276803
Target:  5'- aAGGUCG-CGGCGAacccgGCGcUCGCGGAGc -3'
miRNA:   3'- -UCCAGCuGCUGCUg----CGCuAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 32799 0.67 0.666486
Target:  5'- cGG-CGAUGcuCGGCGCGuucCGCGAGGc -3'
miRNA:   3'- uCCaGCUGCu-GCUGCGCua-GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 1228 0.68 0.644636
Target:  5'- cGGGUCGGCGuACGuC-CGuUCGCGGAc -3'
miRNA:   3'- -UCCAGCUGC-UGCuGcGCuAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 33762 0.7 0.533005
Target:  5'- cAGGUCaacgacucccugcgGACGcucgcgcagaACGGCGUGAUCGCGGu- -3'
miRNA:   3'- -UCCAG--------------CUGC----------UGCUGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 2186 0.78 0.167687
Target:  5'- cGGGUgcaacgcCGAUGGCGcGCGCGAUCGCGGAc -3'
miRNA:   3'- -UCCA-------GCUGCUGC-UGCGCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 12762 0.68 0.62274
Target:  5'- cGGccgCGGCaGACGugGCGcgCGUGGAc -3'
miRNA:   3'- uCCa--GCUG-CUGCugCGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 30223 0.81 0.111125
Target:  5'- -cGUCGACGcCGACGCGAgcCGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGCGCUa-GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 29998 0.69 0.546825
Target:  5'- cGGGccCGGCGACGACGUcccggccgaGGUCGCcGAGc -3'
miRNA:   3'- -UCCa-GCUGCUGCUGCG---------CUAGCGcUUC- -5'
26388 5' -54.8 NC_005345.2 + 12419 0.68 0.600876
Target:  5'- cGGcCGAUGACGucgagGCGCG-UCGCGcGGg -3'
miRNA:   3'- uCCaGCUGCUGC-----UGCGCuAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 30684 0.71 0.461101
Target:  5'- uGGGUCGACGAuccggcCGGCugcggguggccgcgGUGAUCgGCGAGGa -3'
miRNA:   3'- -UCCAGCUGCU------GCUG--------------CGCUAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 48427 0.71 0.44441
Target:  5'- -cGUCGACGGCGugGgCGAUC-UGGAGc -3'
miRNA:   3'- ucCAGCUGCUGCugC-GCUAGcGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 40987 0.72 0.406523
Target:  5'- cGGcGUCGGCGGCGACuuccugguucagGCGAUcagCGCGAAa -3'
miRNA:   3'- -UC-CAGCUGCUGCUG------------CGCUA---GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 11888 0.73 0.345331
Target:  5'- --cUCGACGACGACGCGAcCGCc--- -3'
miRNA:   3'- uccAGCUGCUGCUGCGCUaGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 19065 0.67 0.677369
Target:  5'- uGGUCGccuACGGgGucuACGCGAUCGUGcGGg -3'
miRNA:   3'- uCCAGC---UGCUgC---UGCGCUAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 11029 0.67 0.666486
Target:  5'- cGGUCGAUGACGGgGCccacUCGCacccGAAGu -3'
miRNA:   3'- uCCAGCUGCUGCUgCGcu--AGCG----CUUC- -5'
26388 5' -54.8 NC_005345.2 + 3838 0.67 0.666486
Target:  5'- gAGGUCGGCGGCGuGCGgacccggcUGAUCgGCGucGg -3'
miRNA:   3'- -UCCAGCUGCUGC-UGC--------GCUAG-CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 11577 0.68 0.644636
Target:  5'- cAGcUCGACGACGGgcgccuCGCGGUgGCGuGGg -3'
miRNA:   3'- -UCcAGCUGCUGCU------GCGCUAgCGCuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.