miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 1228 0.68 0.644636
Target:  5'- cGGGUCGGCGuACGuC-CGuUCGCGGAc -3'
miRNA:   3'- -UCCAGCUGC-UGCuGcGCuAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 12762 0.68 0.62274
Target:  5'- cGGccgCGGCaGACGugGCGcgCGUGGAc -3'
miRNA:   3'- uCCa--GCUG-CUGCugCGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 12419 0.68 0.600876
Target:  5'- cGGcCGAUGACGucgagGCGCG-UCGCGcGGg -3'
miRNA:   3'- uCCaGCUGCUGC-----UGCGCuAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 11217 0.66 0.74139
Target:  5'- -cGUCGGCGuCGAgGCGucCGCGAAc -3'
miRNA:   3'- ucCAGCUGCuGCUgCGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 33174 0.72 0.397372
Target:  5'- gAGGUacgGACGAccuCGGCGaCGAUCGCGGGc -3'
miRNA:   3'- -UCCAg--CUGCU---GCUGC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 30445 0.68 0.62274
Target:  5'- ---gCGAUGACGACGCcGAcCGCGAu- -3'
miRNA:   3'- uccaGCUGCUGCUGCG-CUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 18937 0.68 0.633688
Target:  5'- -cGUCGGCGuCGACGuUGAUCucguggcgGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGC-GCUAG--------CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 1089 0.68 0.644636
Target:  5'- --cUCGACGGCGACgaGCGGUgCGCGccGg -3'
miRNA:   3'- uccAGCUGCUGCUG--CGCUA-GCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 45134 0.68 0.611799
Target:  5'- cAGGUCGAgGACGuCGUGAauguugcucUCGaCGAGc -3'
miRNA:   3'- -UCCAGCUgCUGCuGCGCU---------AGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 27985 0.68 0.62274
Target:  5'- -cGUCGACgGGCGGgGCG-UCGCGuAGGg -3'
miRNA:   3'- ucCAGCUG-CUGCUgCGCuAGCGC-UUC- -5'
26388 5' -54.8 NC_005345.2 + 30885 0.71 0.464081
Target:  5'- cGGGUgCgGGCGACGGCGCGGcCgGCGAGc -3'
miRNA:   3'- -UCCA-G-CUGCUGCUGCGCUaG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 23752 0.71 0.464081
Target:  5'- cGGccUCGACGGCGAggccggcgGCGAUCGCGucGa -3'
miRNA:   3'- uCC--AGCUGCUGCUg-------CGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 37254 0.71 0.464081
Target:  5'- cGGG-CGACGGCGGCggucGCGucGUCGuCGAGGg -3'
miRNA:   3'- -UCCaGCUGCUGCUG----CGC--UAGC-GCUUC- -5'
26388 5' -54.8 NC_005345.2 + 44451 0.72 0.425215
Target:  5'- cGGGUguACuGCGGCGCGAUCGUGAu- -3'
miRNA:   3'- -UCCAgcUGcUGCUGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 9400 0.72 0.397372
Target:  5'- -cGUCGuCGACGGCGCGuggcaGCGggGu -3'
miRNA:   3'- ucCAGCuGCUGCUGCGCuag--CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 40069 0.73 0.370728
Target:  5'- cGGUCGcCGGCGACGgCGGcccggauaaagUCGCGGAc -3'
miRNA:   3'- uCCAGCuGCUGCUGC-GCU-----------AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 24106 0.74 0.321206
Target:  5'- gGGGUCGGCGuacaugcccACGACGuCGuacGUCGCGAAc -3'
miRNA:   3'- -UCCAGCUGC---------UGCUGC-GC---UAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 14048 0.71 0.464081
Target:  5'- cGGGaCGACGACcgcgaccACGaCGAUCGCGAAc -3'
miRNA:   3'- -UCCaGCUGCUGc------UGC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 7271 0.66 0.720366
Target:  5'- aAGcGUCGcCGcCcGCGCGAUCGcCGAGGc -3'
miRNA:   3'- -UC-CAGCuGCuGcUGCGCUAGC-GCUUC- -5'
26388 5' -54.8 NC_005345.2 + 10042 0.66 0.720366
Target:  5'- cGuGUCGAgacggagaacCGACGACGCcGAcgUCGCGgcGa -3'
miRNA:   3'- uC-CAGCU----------GCUGCUGCG-CU--AGCGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.