miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 15977 0.66 0.74139
Target:  5'- -aGUUGGCGAUGuGCGCGGcgucgagguucaUCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGC-UGCGCU------------AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 5609 0.66 0.751744
Target:  5'- -uGUCGGCGACGAgcucgGCGAUccgcucCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGCUg----CGCUA------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 3435 0.66 0.751744
Target:  5'- cGG-CGGgCGGCGAUGCGGgccccgagcUCGCGcGGg -3'
miRNA:   3'- uCCaGCU-GCUGCUGCGCU---------AGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 48371 0.66 0.751744
Target:  5'- uGGGgcgaGGCGACGGCGCug-CGCugGGAGa -3'
miRNA:   3'- -UCCag--CUGCUGCUGCGcuaGCG--CUUC- -5'
26388 5' -54.8 NC_005345.2 + 10664 0.66 0.761977
Target:  5'- cGGGUCGGCGAgcCGAUcaggguguGCG-UCGCGucGu -3'
miRNA:   3'- -UCCAGCUGCU--GCUG--------CGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 7271 0.66 0.720366
Target:  5'- aAGcGUCGcCGcCcGCGCGAUCGcCGAGGc -3'
miRNA:   3'- -UC-CAGCuGCuGcUGCGCUAGC-GCUUC- -5'
26388 5' -54.8 NC_005345.2 + 19418 0.67 0.709719
Target:  5'- cGGUCGGCuGCGccGCGuCGGUCGCa--- -3'
miRNA:   3'- uCCAGCUGcUGC--UGC-GCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 30445 0.68 0.62274
Target:  5'- ---gCGAUGACGACGCcGAcCGCGAu- -3'
miRNA:   3'- uccaGCUGCUGCUGCG-CUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 18937 0.68 0.633688
Target:  5'- -cGUCGGCGuCGACGuUGAUCucguggcgGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGC-GCUAG--------CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 1089 0.68 0.644636
Target:  5'- --cUCGACGGCGACgaGCGGUgCGCGccGg -3'
miRNA:   3'- uccAGCUGCUGCUG--CGCUA-GCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 17647 0.68 0.644636
Target:  5'- cGGUCGGucACGAcCGUGuUCGCGggGc -3'
miRNA:   3'- uCCAGCUgcUGCU-GCGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 24592 0.68 0.644636
Target:  5'- cAGGcCGGCGACGA-GCGAcugcUCGuCGGAc -3'
miRNA:   3'- -UCCaGCUGCUGCUgCGCU----AGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 25140 0.68 0.655572
Target:  5'- --cUCGGCGA--GCGCGAUCGCGccGa -3'
miRNA:   3'- uccAGCUGCUgcUGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 6126 0.68 0.655572
Target:  5'- cGGcCGcCGACGACGCaGUaCGgGAAGa -3'
miRNA:   3'- uCCaGCuGCUGCUGCGcUA-GCgCUUC- -5'
26388 5' -54.8 NC_005345.2 + 20134 0.67 0.666486
Target:  5'- -cGUCGACGuCGACGUucggGAgccaccgCGCGAGGc -3'
miRNA:   3'- ucCAGCUGCuGCUGCG----CUa------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 43457 0.67 0.677369
Target:  5'- aGGGaCGGCGGCGAguuCGCGGcgcagCGCGGu- -3'
miRNA:   3'- -UCCaGCUGCUGCU---GCGCUa----GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 31250 0.67 0.688209
Target:  5'- gGGGUCGGguGCGcacucggguGCGCGggUGCGggGg -3'
miRNA:   3'- -UCCAGCUgcUGC---------UGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 43622 0.67 0.688209
Target:  5'- cAGGUCgGGCccccCGGCGgGGUCGCGGu- -3'
miRNA:   3'- -UCCAG-CUGcu--GCUGCgCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 8175 0.67 0.688209
Target:  5'- -cGcCGACGcCGAgGuCGAUCGCGAAa -3'
miRNA:   3'- ucCaGCUGCuGCUgC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 2523 0.67 0.709719
Target:  5'- uGGcaUCGACGugGgggguuuccACGCGGUgGCGAc- -3'
miRNA:   3'- uCC--AGCUGCugC---------UGCGCUAgCGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.