miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 42124 0.66 0.552719
Target:  5'- cCGUUCacgaaggggACCGCacucaCGGuGGCGaCGCUGCCUGu -3'
miRNA:   3'- -GCAAG---------UGGCG-----GCC-CUGC-GUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34227 0.66 0.552719
Target:  5'- aGUUCGC--CCGGGGCGgCACgGCCgCGa -3'
miRNA:   3'- gCAAGUGgcGGCCCUGC-GUGaUGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 4290 0.66 0.552719
Target:  5'- gCGgcCGCCG-CGGGGCGC-CUcggagaucaagcACCCGu -3'
miRNA:   3'- -GCaaGUGGCgGCCCUGCGuGA------------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36248 0.66 0.54644
Target:  5'- uGUUCugCGCCGGaugaaccaggagagcGGCG-GCaACCCGg -3'
miRNA:   3'- gCAAGugGCGGCC---------------CUGCgUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34788 0.66 0.542266
Target:  5'- cCGagCugCGCCGGGucgcgguccucGCGCACgccgugcgccUGCCCc -3'
miRNA:   3'- -GCaaGugGCGGCCC-----------UGCGUG----------AUGGGc -5'
26389 3' -58.7 NC_005345.2 + 31382 0.66 0.542266
Target:  5'- cCG-UCAUCGCCGGGuaccuGCGUGCcguCCUGg -3'
miRNA:   3'- -GCaAGUGGCGGCCC-----UGCGUGau-GGGC- -5'
26389 3' -58.7 NC_005345.2 + 19991 0.66 0.542266
Target:  5'- gGUUCGCCGa-GGGcgacagGCGgGCUGCCgGg -3'
miRNA:   3'- gCAAGUGGCggCCC------UGCgUGAUGGgC- -5'
26389 3' -58.7 NC_005345.2 + 14228 0.66 0.531881
Target:  5'- --cUCGCCGCCGcccucGCGCAC-GCCCu -3'
miRNA:   3'- gcaAGUGGCGGCcc---UGCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 4932 0.66 0.531881
Target:  5'- aCGUgCGCUccgGCCGGGugGCggucACggagACCCa -3'
miRNA:   3'- -GCAaGUGG---CGGCCCugCG----UGa---UGGGc -5'
26389 3' -58.7 NC_005345.2 + 9800 0.66 0.531881
Target:  5'- uGUUCGCCgcugugucgcgGCCGGuGcCGCcgaUGCCCGa -3'
miRNA:   3'- gCAAGUGG-----------CGGCC-CuGCGug-AUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 44892 0.66 0.531881
Target:  5'- ---gCACCGCCGGuGuuCGCcgGCaGCCCGa -3'
miRNA:   3'- gcaaGUGGCGGCC-Cu-GCG--UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 11995 0.66 0.531881
Target:  5'- gCGaUC-CgGCaggaacgacuCGGGACGaCGCUGCCCGg -3'
miRNA:   3'- -GCaAGuGgCG----------GCCCUGC-GUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 37698 0.66 0.521568
Target:  5'- cCGUggGCCGCCaguccugcGGGAuCGCGCUGCggcgcggcgCCGg -3'
miRNA:   3'- -GCAagUGGCGG--------CCCU-GCGUGAUG---------GGC- -5'
26389 3' -58.7 NC_005345.2 + 30203 0.66 0.521568
Target:  5'- uCGgacCGCUGCCGGGcgacgauCGCGC-AUCCGg -3'
miRNA:   3'- -GCaa-GUGGCGGCCCu------GCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 13418 0.66 0.521568
Target:  5'- uCGUUCgGCCGCCGcGGGCgagcaguuucgGCGCguccggcagcuUGCCCa -3'
miRNA:   3'- -GCAAG-UGGCGGC-CCUG-----------CGUG-----------AUGGGc -5'
26389 3' -58.7 NC_005345.2 + 43940 0.66 0.508279
Target:  5'- gCGUgUAgCGCCGGGccggccgugccgauGCGUGCaGCCCGg -3'
miRNA:   3'- -GCAaGUgGCGGCCC--------------UGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 45949 0.67 0.495135
Target:  5'- --gUCAUCGCCGGGuACGacaucccucagggcuCGCcgACCCGg -3'
miRNA:   3'- gcaAGUGGCGGCCC-UGC---------------GUGa-UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 42016 0.67 0.491122
Target:  5'- cCGcUCACCuucGCCGGGGgauacguccccCGCACcggcaGCCCGa -3'
miRNA:   3'- -GCaAGUGG---CGGCCCU-----------GCGUGa----UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 7118 0.67 0.491122
Target:  5'- aCGUguggCGCCGCgcgaacCGGGcgGgGCACgugGCCCGg -3'
miRNA:   3'- -GCAa---GUGGCG------GCCC--UgCGUGa--UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 46084 0.67 0.491122
Target:  5'- ----gGCCGCCGGGGCcuGCGCggacAUCCa -3'
miRNA:   3'- gcaagUGGCGGCCCUG--CGUGa---UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.