miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 7118 0.67 0.491122
Target:  5'- aCGUguggCGCCGCgcgaacCGGGcgGgGCACgugGCCCGg -3'
miRNA:   3'- -GCAa---GUGGCG------GCCC--UgCGUGa--UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 42016 0.67 0.491122
Target:  5'- cCGcUCACCuucGCCGGGGgauacguccccCGCACcggcaGCCCGa -3'
miRNA:   3'- -GCaAGUGG---CGGCCCU-----------GCGUGa----UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36365 0.67 0.442327
Target:  5'- -uUUCGCCGCguaCGcGGGCGCGCU-CCgCGg -3'
miRNA:   3'- gcAAGUGGCG---GC-CCUGCGUGAuGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 41631 0.67 0.461526
Target:  5'- aCGacCGCCGCCGGca-GCAC-GCCCa -3'
miRNA:   3'- -GCaaGUGGCGGCCcugCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 15990 0.67 0.471289
Target:  5'- cCGUaccuCUGUgGGcGACGUGCUGCCCGa -3'
miRNA:   3'- -GCAagu-GGCGgCC-CUGCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 33422 0.67 0.481156
Target:  5'- uGUUCACaGCaGGGugGCggGCgGCCCGc -3'
miRNA:   3'- gCAAGUGgCGgCCCugCG--UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36478 0.67 0.461526
Target:  5'- cCGUgucggUGCCGUgGGGGCGCAgUucagccagugcGCCCGc -3'
miRNA:   3'- -GCAa----GUGGCGgCCCUGCGUgA-----------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34465 0.67 0.461526
Target:  5'- aCGggCACgGCCGGcccggcaucGGCGaCGCcGCCCGg -3'
miRNA:   3'- -GCaaGUGgCGGCC---------CUGC-GUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 21015 0.67 0.460556
Target:  5'- gCGUUCGCCGgcCCGGGugcguuccucggcACGCGCg--CCGg -3'
miRNA:   3'- -GCAAGUGGC--GGCCC-------------UGCGUGaugGGC- -5'
26389 3' -58.7 NC_005345.2 + 10471 0.67 0.442327
Target:  5'- --gUCGgCGUagGGGACGaCGCUACCCu -3'
miRNA:   3'- gcaAGUgGCGg-CCCUGC-GUGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 46084 0.67 0.491122
Target:  5'- ----gGCCGCCGGGGCcuGCGCggacAUCCa -3'
miRNA:   3'- gcaagUGGCGGCCCUG--CGUGa---UGGGc -5'
26389 3' -58.7 NC_005345.2 + 3568 0.67 0.481156
Target:  5'- cCGUUCGCgGCCcccGGcCGCAaccgGCCCGc -3'
miRNA:   3'- -GCAAGUGgCGGc--CCuGCGUga--UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 39220 0.67 0.481156
Target:  5'- ----gACCGUCGGGccgACGCcgACUGCCCc -3'
miRNA:   3'- gcaagUGGCGGCCC---UGCG--UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 45949 0.67 0.495135
Target:  5'- --gUCAUCGCCGGGuACGacaucccucagggcuCGCcgACCCGg -3'
miRNA:   3'- gcaAGUGGCGGCCC-UGC---------------GUGa-UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 15055 0.68 0.423588
Target:  5'- --gUCGCCGUCGcGGGCGC-CgGCCUGc -3'
miRNA:   3'- gcaAGUGGCGGC-CCUGCGuGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 18971 0.68 0.387579
Target:  5'- gCGcUCGCCGCaUGGGuCGCcGCUGgCCGg -3'
miRNA:   3'- -GCaAGUGGCG-GCCCuGCG-UGAUgGGC- -5'
26389 3' -58.7 NC_005345.2 + 29239 0.68 0.387579
Target:  5'- cCGUUCAUCGCCcGcGAUGCGCagcggcucGCCCGc -3'
miRNA:   3'- -GCAAGUGGCGGcC-CUGCGUGa-------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 19118 0.68 0.395505
Target:  5'- gCGcUCACCGCaugguggcugCGGGccgcaugGCGCGCcACCCGg -3'
miRNA:   3'- -GCaAGUGGCG----------GCCC-------UGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 29993 0.68 0.432898
Target:  5'- gCGUccUCgGCCGggguCCGGGugGCGCgccaugcgGCCCGc -3'
miRNA:   3'- -GCA--AG-UGGC----GGCCCugCGUGa-------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40154 0.68 0.414398
Target:  5'- cCGUgcuGCCGUCGGGcAgGCACacGCCCGu -3'
miRNA:   3'- -GCAag-UGGCGGCCC-UgCGUGa-UGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.