miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 16586 0.7 0.306791
Target:  5'- gCGUUCAaCGCUGcGGugGCGugGCCCGa -3'
miRNA:   3'- -GCAAGUgGCGGC-CCugCGUgaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 5179 0.7 0.307531
Target:  5'- uCGggCgaGCCGCCGGGcUGCACgcaucggcacggccgGCCCGg -3'
miRNA:   3'- -GCaaG--UGGCGGCCCuGCGUGa--------------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 31302 0.7 0.329603
Target:  5'- -aUUC-CCGCCGGG-CGCuGCUGCgCGg -3'
miRNA:   3'- gcAAGuGGCGGCCCuGCG-UGAUGgGC- -5'
26389 3' -58.7 NC_005345.2 + 14916 0.7 0.329603
Target:  5'- gCGUUCGCgGCCGugccgccccGGGCGaacuGCUGCCCc -3'
miRNA:   3'- -GCAAGUGgCGGC---------CCUGCg---UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 20412 0.7 0.337481
Target:  5'- cCGUaccUC-CCGCCGuGGGCGCcguacCUGCCCc -3'
miRNA:   3'- -GCA---AGuGGCGGC-CCUGCGu----GAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 34995 0.69 0.345495
Target:  5'- gGUacUCGgCGCCGGGGCGCuGCggcgGCCaCGu -3'
miRNA:   3'- gCA--AGUgGCGGCCCUGCG-UGa---UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 39700 0.69 0.345495
Target:  5'- cCGgaCACCGcCCGGGACGaGCUcggGCCaCGa -3'
miRNA:   3'- -GCaaGUGGC-GGCCCUGCgUGA---UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 43665 0.69 0.353644
Target:  5'- uCGUgccugcCGCCGCCGGGugGCugauCaGCCUc -3'
miRNA:   3'- -GCAa-----GUGGCGGCCCugCGu---GaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 18556 0.69 0.353644
Target:  5'- gGggCGCuCGCCGGG-UGCGC-GCCCa -3'
miRNA:   3'- gCaaGUG-GCGGCCCuGCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 43816 0.69 0.356941
Target:  5'- --cUCGgCGuCCGGGucgaucaggcugaucACGUACUGCCCGg -3'
miRNA:   3'- gcaAGUgGC-GGCCC---------------UGCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 35584 0.69 0.361094
Target:  5'- uCGUcgCGCCGCCGugcccguGGAUGUggucgacggacaGCUGCCCGc -3'
miRNA:   3'- -GCAa-GUGGCGGC-------CCUGCG------------UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 46226 0.69 0.378897
Target:  5'- aCGUcCugCGuuGGG-C-CGCUGCCCGg -3'
miRNA:   3'- -GCAaGugGCggCCCuGcGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 19157 0.69 0.378897
Target:  5'- aCG-UCGUCGCCGGGccCGUacgGCUGCCCGu -3'
miRNA:   3'- -GCaAGUGGCGGCCCu-GCG---UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 18971 0.68 0.387579
Target:  5'- gCGcUCGCCGCaUGGGuCGCcGCUGgCCGg -3'
miRNA:   3'- -GCaAGUGGCG-GCCCuGCG-UGAUgGGC- -5'
26389 3' -58.7 NC_005345.2 + 29239 0.68 0.387579
Target:  5'- cCGUUCAUCGCCcGcGAUGCGCagcggcucGCCCGc -3'
miRNA:   3'- -GCAAGUGGCGGcC-CUGCGUGa-------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40428 0.68 0.387579
Target:  5'- --aUCGCCGCCGGcGACGgACgagucgGCCa- -3'
miRNA:   3'- gcaAGUGGCGGCC-CUGCgUGa-----UGGgc -5'
26389 3' -58.7 NC_005345.2 + 19118 0.68 0.395505
Target:  5'- gCGcUCACCGCaugguggcugCGGGccgcaugGCGCGCcACCCGg -3'
miRNA:   3'- -GCaAGUGGCG----------GCCC-------UGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 27128 0.68 0.396392
Target:  5'- aCGgcggCACCgGCCGGcGuCGaGCUGCCCGa -3'
miRNA:   3'- -GCaa--GUGG-CGGCC-CuGCgUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40818 0.68 0.405332
Target:  5'- gCGUgcacCGCCGCCGGaACGCuGCUGCUg- -3'
miRNA:   3'- -GCAa---GUGGCGGCCcUGCG-UGAUGGgc -5'
26389 3' -58.7 NC_005345.2 + 40154 0.68 0.414398
Target:  5'- cCGUgcuGCCGUCGGGcAgGCACacGCCCGu -3'
miRNA:   3'- -GCAag-UGGCGGCCC-UgCGUGa-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.