Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26389 | 3' | -58.7 | NC_005345.2 | + | 17013 | 0.67 | 0.458618 |
Target: 5'- gCGggCuGCCGCCGaGGcGaucgcccucgcaccCGCGCUGCCCGa -3' miRNA: 3'- -GCaaG-UGGCGGC-CC-U--------------GCGUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 17299 | 0.7 | 0.306791 |
Target: 5'- aCGUUCGCCGCaGGuGCGCcGC-ACCCGc -3' miRNA: 3'- -GCAAGUGGCGgCCcUGCG-UGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 17736 | 0.79 | 0.079596 |
Target: 5'- --cUCAUCGCCGGGuGCGCACUcGCCCu -3' miRNA: 3'- gcaAGUGGCGGCCC-UGCGUGA-UGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 18185 | 0.68 | 0.432898 |
Target: 5'- gCGUaCACCGUCGGcGAgGCGC-GCgCCGa -3' miRNA: 3'- -GCAaGUGGCGGCC-CUgCGUGaUG-GGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 18556 | 0.69 | 0.353644 |
Target: 5'- gGggCGCuCGCCGGG-UGCGC-GCCCa -3' miRNA: 3'- gCaaGUG-GCGGCCCuGCGUGaUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 18930 | 0.74 | 0.185048 |
Target: 5'- --cUCACCGCC-GGAUGCGCgaucgucGCCCGg -3' miRNA: 3'- gcaAGUGGCGGcCCUGCGUGa------UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 18971 | 0.68 | 0.387579 |
Target: 5'- gCGcUCGCCGCaUGGGuCGCcGCUGgCCGg -3' miRNA: 3'- -GCaAGUGGCG-GCCCuGCG-UGAUgGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 19118 | 0.68 | 0.395505 |
Target: 5'- gCGcUCACCGCaugguggcugCGGGccgcaugGCGCGCcACCCGg -3' miRNA: 3'- -GCaAGUGGCG----------GCCC-------UGCGUGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 19157 | 0.69 | 0.378897 |
Target: 5'- aCG-UCGUCGCCGGGccCGUacgGCUGCCCGu -3' miRNA: 3'- -GCaAGUGGCGGCCCu-GCG---UGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 19991 | 0.66 | 0.542266 |
Target: 5'- gGUUCGCCGa-GGGcgacagGCGgGCUGCCgGg -3' miRNA: 3'- gCAAGUGGCggCCC------UGCgUGAUGGgC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 20412 | 0.7 | 0.337481 |
Target: 5'- cCGUaccUC-CCGCCGuGGGCGCcguacCUGCCCc -3' miRNA: 3'- -GCA---AGuGGCGGC-CCUGCGu----GAUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 21015 | 0.67 | 0.460556 |
Target: 5'- gCGUUCGCCGgcCCGGGugcguuccucggcACGCGCg--CCGg -3' miRNA: 3'- -GCAAGUGGC--GGCCC-------------UGCGUGaugGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 23354 | 0.71 | 0.285206 |
Target: 5'- cCGUgCugCGCUGGGagcgggccgagGCGCccgaGCUGCCCGa -3' miRNA: 3'- -GCAaGugGCGGCCC-----------UGCG----UGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 26468 | 0.71 | 0.258315 |
Target: 5'- cCGcUUCACCGCCacGACGagcgACUGCCCGa -3' miRNA: 3'- -GC-AAGUGGCGGccCUGCg---UGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 26913 | 0.67 | 0.481156 |
Target: 5'- gCGcUCGCCGaCCGGuacGACGCGCUGUCgGg -3' miRNA: 3'- -GCaAGUGGC-GGCC---CUGCGUGAUGGgC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 27128 | 0.68 | 0.396392 |
Target: 5'- aCGgcggCACCgGCCGGcGuCGaGCUGCCCGa -3' miRNA: 3'- -GCaa--GUGG-CGGCC-CuGCgUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 28611 | 1.1 | 0.000425 |
Target: 5'- aCGUUCACCGCCGGGACGCACUACCCGg -3' miRNA: 3'- -GCAAGUGGCGGCCCUGCGUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 29239 | 0.68 | 0.387579 |
Target: 5'- cCGUUCAUCGCCcGcGAUGCGCagcggcucGCCCGc -3' miRNA: 3'- -GCAAGUGGCGGcC-CUGCGUGa-------UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 29993 | 0.68 | 0.432898 |
Target: 5'- gCGUccUCgGCCGggguCCGGGugGCGCgccaugcgGCCCGc -3' miRNA: 3'- -GCA--AG-UGGC----GGCCCugCGUGa-------UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 30203 | 0.66 | 0.521568 |
Target: 5'- uCGgacCGCUGCCGGGcgacgauCGCGC-AUCCGg -3' miRNA: 3'- -GCaa-GUGGCGGCCCu------GCGUGaUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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