miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 30581 0.71 0.292265
Target:  5'- uGUUCccgaCGCUGGG-CGCGC-ACCCGg -3'
miRNA:   3'- gCAAGug--GCGGCCCuGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 31302 0.7 0.329603
Target:  5'- -aUUC-CCGCCGGG-CGCuGCUGCgCGg -3'
miRNA:   3'- gcAAGuGGCGGCCCuGCG-UGAUGgGC- -5'
26389 3' -58.7 NC_005345.2 + 31382 0.66 0.542266
Target:  5'- cCG-UCAUCGCCGGGuaccuGCGUGCcguCCUGg -3'
miRNA:   3'- -GCaAGUGGCGGCCC-----UGCGUGau-GGGC- -5'
26389 3' -58.7 NC_005345.2 + 31801 0.72 0.250033
Target:  5'- gGUUCGCCGuCCGGGucgggguccgggauGCGUGCgugcACCCGc -3'
miRNA:   3'- gCAAGUGGC-GGCCC--------------UGCGUGa---UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 33020 0.75 0.138021
Target:  5'- ---gUACCGCCGGGACGCcgccggccggccGCUGCUCa -3'
miRNA:   3'- gcaaGUGGCGGCCCUGCG------------UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 33422 0.67 0.481156
Target:  5'- uGUUCACaGCaGGGugGCggGCgGCCCGc -3'
miRNA:   3'- gCAAGUGgCGgCCCugCG--UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34227 0.66 0.552719
Target:  5'- aGUUCGC--CCGGGGCGgCACgGCCgCGa -3'
miRNA:   3'- gCAAGUGgcGGCCCUGC-GUGaUGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 34465 0.67 0.461526
Target:  5'- aCGggCACgGCCGGcccggcaucGGCGaCGCcGCCCGg -3'
miRNA:   3'- -GCaaGUGgCGGCC---------CUGC-GUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34788 0.66 0.542266
Target:  5'- cCGagCugCGCCGGGucgcgguccucGCGCACgccgugcgccUGCCCc -3'
miRNA:   3'- -GCaaGugGCGGCCC-----------UGCGUG----------AUGGGc -5'
26389 3' -58.7 NC_005345.2 + 34995 0.69 0.345495
Target:  5'- gGUacUCGgCGCCGGGGCGCuGCggcgGCCaCGu -3'
miRNA:   3'- gCA--AGUgGCGGCCCUGCG-UGa---UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 35457 0.71 0.285206
Target:  5'- --cUCGCCGCauuCGaGGGCGaGCUGCCCGa -3'
miRNA:   3'- gcaAGUGGCG---GC-CCUGCgUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 35584 0.69 0.361094
Target:  5'- uCGUcgCGCCGCCGugcccguGGAUGUggucgacggacaGCUGCCCGc -3'
miRNA:   3'- -GCAa-GUGGCGGC-------CCUGCG------------UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36248 0.66 0.54644
Target:  5'- uGUUCugCGCCGGaugaaccaggagagcGGCG-GCaACCCGg -3'
miRNA:   3'- gCAAGugGCGGCC---------------CUGCgUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36365 0.67 0.442327
Target:  5'- -uUUCGCCGCguaCGcGGGCGCGCU-CCgCGg -3'
miRNA:   3'- gcAAGUGGCG---GC-CCUGCGUGAuGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 36478 0.67 0.461526
Target:  5'- cCGUgucggUGCCGUgGGGGCGCAgUucagccagugcGCCCGc -3'
miRNA:   3'- -GCAa----GUGGCGgCCCUGCGUgA-----------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 37496 0.72 0.227657
Target:  5'- aCGUUC-CCGCCGGGcGCGgGCUGCg-- -3'
miRNA:   3'- -GCAAGuGGCGGCCC-UGCgUGAUGggc -5'
26389 3' -58.7 NC_005345.2 + 37698 0.66 0.521568
Target:  5'- cCGUggGCCGCCaguccugcGGGAuCGCGCUGCggcgcggcgCCGg -3'
miRNA:   3'- -GCAagUGGCGG--------CCCU-GCGUGAUG---------GGC- -5'
26389 3' -58.7 NC_005345.2 + 37858 0.67 0.481156
Target:  5'- uCGgUCGCgGCCGGcGAgGCucagGCCCGg -3'
miRNA:   3'- -GCaAGUGgCGGCC-CUgCGuga-UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 39220 0.67 0.481156
Target:  5'- ----gACCGUCGGGccgACGCcgACUGCCCc -3'
miRNA:   3'- gcaagUGGCGGCCC---UGCG--UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 39696 0.67 0.451871
Target:  5'- aGUUCGCgC-CCGGGugGCACgagagcgACCg- -3'
miRNA:   3'- gCAAGUG-GcGGCCCugCGUGa------UGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.