Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26389 | 3' | -58.7 | NC_005345.2 | + | 37858 | 0.67 | 0.481156 |
Target: 5'- uCGgUCGCgGCCGGcGAgGCucagGCCCGg -3' miRNA: 3'- -GCaAGUGgCGGCC-CUgCGuga-UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 37698 | 0.66 | 0.521568 |
Target: 5'- cCGUggGCCGCCaguccugcGGGAuCGCGCUGCggcgcggcgCCGg -3' miRNA: 3'- -GCAagUGGCGG--------CCCU-GCGUGAUG---------GGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 37496 | 0.72 | 0.227657 |
Target: 5'- aCGUUC-CCGCCGGGcGCGgGCUGCg-- -3' miRNA: 3'- -GCAAGuGGCGGCCC-UGCgUGAUGggc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 36478 | 0.67 | 0.461526 |
Target: 5'- cCGUgucggUGCCGUgGGGGCGCAgUucagccagugcGCCCGc -3' miRNA: 3'- -GCAa----GUGGCGgCCCUGCGUgA-----------UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 36365 | 0.67 | 0.442327 |
Target: 5'- -uUUCGCCGCguaCGcGGGCGCGCU-CCgCGg -3' miRNA: 3'- gcAAGUGGCG---GC-CCUGCGUGAuGG-GC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 36248 | 0.66 | 0.54644 |
Target: 5'- uGUUCugCGCCGGaugaaccaggagagcGGCG-GCaACCCGg -3' miRNA: 3'- gCAAGugGCGGCC---------------CUGCgUGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 35584 | 0.69 | 0.361094 |
Target: 5'- uCGUcgCGCCGCCGugcccguGGAUGUggucgacggacaGCUGCCCGc -3' miRNA: 3'- -GCAa-GUGGCGGC-------CCUGCG------------UGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 35457 | 0.71 | 0.285206 |
Target: 5'- --cUCGCCGCauuCGaGGGCGaGCUGCCCGa -3' miRNA: 3'- gcaAGUGGCG---GC-CCUGCgUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 34995 | 0.69 | 0.345495 |
Target: 5'- gGUacUCGgCGCCGGGGCGCuGCggcgGCCaCGu -3' miRNA: 3'- gCA--AGUgGCGGCCCUGCG-UGa---UGG-GC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 34788 | 0.66 | 0.542266 |
Target: 5'- cCGagCugCGCCGGGucgcgguccucGCGCACgccgugcgccUGCCCc -3' miRNA: 3'- -GCaaGugGCGGCCC-----------UGCGUG----------AUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 34465 | 0.67 | 0.461526 |
Target: 5'- aCGggCACgGCCGGcccggcaucGGCGaCGCcGCCCGg -3' miRNA: 3'- -GCaaGUGgCGGCC---------CUGC-GUGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 34227 | 0.66 | 0.552719 |
Target: 5'- aGUUCGC--CCGGGGCGgCACgGCCgCGa -3' miRNA: 3'- gCAAGUGgcGGCCCUGC-GUGaUGG-GC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 33422 | 0.67 | 0.481156 |
Target: 5'- uGUUCACaGCaGGGugGCggGCgGCCCGc -3' miRNA: 3'- gCAAGUGgCGgCCCugCG--UGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 33020 | 0.75 | 0.138021 |
Target: 5'- ---gUACCGCCGGGACGCcgccggccggccGCUGCUCa -3' miRNA: 3'- gcaaGUGGCGGCCCUGCG------------UGAUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 31801 | 0.72 | 0.250033 |
Target: 5'- gGUUCGCCGuCCGGGucgggguccgggauGCGUGCgugcACCCGc -3' miRNA: 3'- gCAAGUGGC-GGCCC--------------UGCGUGa---UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 31382 | 0.66 | 0.542266 |
Target: 5'- cCG-UCAUCGCCGGGuaccuGCGUGCcguCCUGg -3' miRNA: 3'- -GCaAGUGGCGGCCC-----UGCGUGau-GGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 31302 | 0.7 | 0.329603 |
Target: 5'- -aUUC-CCGCCGGG-CGCuGCUGCgCGg -3' miRNA: 3'- gcAAGuGGCGGCCCuGCG-UGAUGgGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 30581 | 0.71 | 0.292265 |
Target: 5'- uGUUCccgaCGCUGGG-CGCGC-ACCCGg -3' miRNA: 3'- gCAAGug--GCGGCCCuGCGUGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 30203 | 0.66 | 0.521568 |
Target: 5'- uCGgacCGCUGCCGGGcgacgauCGCGC-AUCCGg -3' miRNA: 3'- -GCaa-GUGGCGGCCCu------GCGUGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 29993 | 0.68 | 0.432898 |
Target: 5'- gCGUccUCgGCCGggguCCGGGugGCGCgccaugcgGCCCGc -3' miRNA: 3'- -GCA--AG-UGGC----GGCCCugCGUGa-------UGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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