Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26389 | 3' | -58.7 | NC_005345.2 | + | 28611 | 1.1 | 0.000425 |
Target: 5'- aCGUUCACCGCCGGGACGCACUACCCGg -3' miRNA: 3'- -GCAAGUGGCGGCCCUGCGUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 18971 | 0.68 | 0.387579 |
Target: 5'- gCGcUCGCCGCaUGGGuCGCcGCUGgCCGg -3' miRNA: 3'- -GCaAGUGGCG-GCCCuGCG-UGAUgGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 19118 | 0.68 | 0.395505 |
Target: 5'- gCGcUCACCGCaugguggcugCGGGccgcaugGCGCGCcACCCGg -3' miRNA: 3'- -GCaAGUGGCG----------GCCC-------UGCGUGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 42124 | 0.66 | 0.552719 |
Target: 5'- cCGUUCacgaaggggACCGCacucaCGGuGGCGaCGCUGCCUGu -3' miRNA: 3'- -GCAAG---------UGGCG-----GCC-CUGC-GUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 18930 | 0.74 | 0.185048 |
Target: 5'- --cUCACCGCC-GGAUGCGCgaucgucGCCCGg -3' miRNA: 3'- gcaAGUGGCGGcCCUGCGUGa------UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 5251 | 0.72 | 0.227077 |
Target: 5'- uGcgCGCCGCCguggcgaugcagcGGGACGCGCUccGCCgCGg -3' miRNA: 3'- gCaaGUGGCGG-------------CCCUGCGUGA--UGG-GC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 3473 | 0.71 | 0.271493 |
Target: 5'- aCGgUCGCgauCCGGG-UGCACUGCCCGg -3' miRNA: 3'- -GCaAGUGgc-GGCCCuGCGUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 23354 | 0.71 | 0.285206 |
Target: 5'- cCGUgCugCGCUGGGagcgggccgagGCGCccgaGCUGCCCGa -3' miRNA: 3'- -GCAaGugGCGGCCC-----------UGCG----UGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 17299 | 0.7 | 0.306791 |
Target: 5'- aCGUUCGCCGCaGGuGCGCcGC-ACCCGc -3' miRNA: 3'- -GCAAGUGGCGgCCcUGCG-UGaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 46226 | 0.69 | 0.378897 |
Target: 5'- aCGUcCugCGuuGGG-C-CGCUGCCCGg -3' miRNA: 3'- -GCAaGugGCggCCCuGcGUGAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 20412 | 0.7 | 0.337481 |
Target: 5'- cCGUaccUC-CCGCCGuGGGCGCcguacCUGCCCc -3' miRNA: 3'- -GCA---AGuGGCGGC-CCUGCGu----GAUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 16586 | 0.7 | 0.306791 |
Target: 5'- gCGUUCAaCGCUGcGGugGCGugGCCCGa -3' miRNA: 3'- -GCAAGUgGCGGC-CCugCGUgaUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 17736 | 0.79 | 0.079596 |
Target: 5'- --cUCAUCGCCGGGuGCGCACUcGCCCu -3' miRNA: 3'- gcaAGUGGCGGCCC-UGCGUGA-UGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 18556 | 0.69 | 0.353644 |
Target: 5'- gGggCGCuCGCCGGG-UGCGC-GCCCa -3' miRNA: 3'- gCaaGUG-GCGGCCCuGCGUGaUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 12878 | 0.76 | 0.120493 |
Target: 5'- --cUCGCCGCCGGGugGCcGCUcGCCuCGa -3' miRNA: 3'- gcaAGUGGCGGCCCugCG-UGA-UGG-GC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 10673 | 0.71 | 0.292265 |
Target: 5'- gGggCGCgGCgCGGGaagugcccGCGCugUGCCCGg -3' miRNA: 3'- gCaaGUGgCG-GCCC--------UGCGugAUGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 43665 | 0.69 | 0.353644 |
Target: 5'- uCGUgccugcCGCCGCCGGGugGCugauCaGCCUc -3' miRNA: 3'- -GCAa-----GUGGCGGCCCugCGu---GaUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 29239 | 0.68 | 0.387579 |
Target: 5'- cCGUUCAUCGCCcGcGAUGCGCagcggcucGCCCGc -3' miRNA: 3'- -GCAAGUGGCGGcC-CUGCGUGa-------UGGGC- -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 33020 | 0.75 | 0.138021 |
Target: 5'- ---gUACCGCCGGGACGCcgccggccggccGCUGCUCa -3' miRNA: 3'- gcaaGUGGCGGCCCUGCG------------UGAUGGGc -5' |
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26389 | 3' | -58.7 | NC_005345.2 | + | 40531 | 0.72 | 0.232939 |
Target: 5'- ---aCGCCGCCGGaACGUucgugaucgccgaGCUGCCCGa -3' miRNA: 3'- gcaaGUGGCGGCCcUGCG-------------UGAUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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