miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 18185 0.68 0.432898
Target:  5'- gCGUaCACCGUCGGcGAgGCGC-GCgCCGa -3'
miRNA:   3'- -GCAaGUGGCGGCC-CUgCGUGaUG-GGC- -5'
26389 3' -58.7 NC_005345.2 + 40818 0.68 0.405332
Target:  5'- gCGUgcacCGCCGCCGGaACGCuGCUGCUg- -3'
miRNA:   3'- -GCAa---GUGGCGGCCcUGCG-UGAUGGgc -5'
26389 3' -58.7 NC_005345.2 + 46226 0.69 0.378897
Target:  5'- aCGUcCugCGuuGGG-C-CGCUGCCCGg -3'
miRNA:   3'- -GCAaGugGCggCCCuGcGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 31302 0.7 0.329603
Target:  5'- -aUUC-CCGCCGGG-CGCuGCUGCgCGg -3'
miRNA:   3'- gcAAGuGGCGGCCCuGCG-UGAUGgGC- -5'
26389 3' -58.7 NC_005345.2 + 43940 0.66 0.508279
Target:  5'- gCGUgUAgCGCCGGGccggccgugccgauGCGUGCaGCCCGg -3'
miRNA:   3'- -GCAaGUgGCGGCCC--------------UGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 15990 0.67 0.471289
Target:  5'- cCGUaccuCUGUgGGcGACGUGCUGCCCGa -3'
miRNA:   3'- -GCAagu-GGCGgCC-CUGCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 19118 0.68 0.395505
Target:  5'- gCGcUCACCGCaugguggcugCGGGccgcaugGCGCGCcACCCGg -3'
miRNA:   3'- -GCaAGUGGCG----------GCCC-------UGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 17299 0.7 0.306791
Target:  5'- aCGUUCGCCGCaGGuGCGCcGC-ACCCGc -3'
miRNA:   3'- -GCAAGUGGCGgCCcUGCG-UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 41631 0.67 0.461526
Target:  5'- aCGacCGCCGCCGGca-GCAC-GCCCa -3'
miRNA:   3'- -GCaaGUGGCGGCCcugCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 16586 0.7 0.306791
Target:  5'- gCGUUCAaCGCUGcGGugGCGugGCCCGa -3'
miRNA:   3'- -GCAAGUgGCGGC-CCugCGUgaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 27128 0.68 0.396392
Target:  5'- aCGgcggCACCgGCCGGcGuCGaGCUGCCCGa -3'
miRNA:   3'- -GCaa--GUGG-CGGCC-CuGCgUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36365 0.67 0.442327
Target:  5'- -uUUCGCCGCguaCGcGGGCGCGCU-CCgCGg -3'
miRNA:   3'- gcAAGUGGCG---GC-CCUGCGUGAuGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 29239 0.68 0.387579
Target:  5'- cCGUUCAUCGCCcGcGAUGCGCagcggcucGCCCGc -3'
miRNA:   3'- -GCAAGUGGCGGcC-CUGCGUGa-------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 18971 0.68 0.387579
Target:  5'- gCGcUCGCCGCaUGGGuCGCcGCUGgCCGg -3'
miRNA:   3'- -GCaAGUGGCG-GCCCuGCG-UGAUgGGC- -5'
26389 3' -58.7 NC_005345.2 + 43665 0.69 0.353644
Target:  5'- uCGUgccugcCGCCGCCGGGugGCugauCaGCCUc -3'
miRNA:   3'- -GCAa-----GUGGCGGCCCugCGu---GaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 20412 0.7 0.337481
Target:  5'- cCGUaccUC-CCGCCGuGGGCGCcguacCUGCCCc -3'
miRNA:   3'- -GCA---AGuGGCGGC-CCUGCGu----GAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 11995 0.66 0.531881
Target:  5'- gCGaUC-CgGCaggaacgacuCGGGACGaCGCUGCCCGg -3'
miRNA:   3'- -GCaAGuGgCG----------GCCCUGC-GUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 4932 0.66 0.531881
Target:  5'- aCGUgCGCUccgGCCGGGugGCggucACggagACCCa -3'
miRNA:   3'- -GCAaGUGG---CGGCCCugCG----UGa---UGGGc -5'
26389 3' -58.7 NC_005345.2 + 7118 0.67 0.491122
Target:  5'- aCGUguggCGCCGCgcgaacCGGGcgGgGCACgugGCCCGg -3'
miRNA:   3'- -GCAa---GUGGCG------GCCC--UgCGUGa--UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 3568 0.67 0.481156
Target:  5'- cCGUUCGCgGCCcccGGcCGCAaccgGCCCGc -3'
miRNA:   3'- -GCAAGUGgCGGc--CCuGCGUga--UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.