miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 37858 0.67 0.481156
Target:  5'- uCGgUCGCgGCCGGcGAgGCucagGCCCGg -3'
miRNA:   3'- -GCaAGUGgCGGCC-CUgCGuga-UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 7118 0.67 0.491122
Target:  5'- aCGUguggCGCCGCgcgaacCGGGcgGgGCACgugGCCCGg -3'
miRNA:   3'- -GCAa---GUGGCG------GCCC--UgCGUGa--UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 14228 0.66 0.531881
Target:  5'- --cUCGCCGCCGcccucGCGCAC-GCCCu -3'
miRNA:   3'- gcaAGUGGCGGCcc---UGCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 5251 0.72 0.227077
Target:  5'- uGcgCGCCGCCguggcgaugcagcGGGACGCGCUccGCCgCGg -3'
miRNA:   3'- gCaaGUGGCGG-------------CCCUGCGUGA--UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 42124 0.66 0.552719
Target:  5'- cCGUUCacgaaggggACCGCacucaCGGuGGCGaCGCUGCCUGu -3'
miRNA:   3'- -GCAAG---------UGGCG-----GCC-CUGC-GUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34227 0.66 0.552719
Target:  5'- aGUUCGC--CCGGGGCGgCACgGCCgCGa -3'
miRNA:   3'- gCAAGUGgcGGCCCUGC-GUGaUGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 39220 0.67 0.481156
Target:  5'- ----gACCGUCGGGccgACGCcgACUGCCCc -3'
miRNA:   3'- gcaagUGGCGGCCC---UGCG--UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 12625 0.74 0.17007
Target:  5'- gCGUUCGCCcacccacgccaguucGCCGGGGCGCggucggccgccguugGCgUACCCGc -3'
miRNA:   3'- -GCAAGUGG---------------CGGCCCUGCG---------------UG-AUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 30203 0.66 0.521568
Target:  5'- uCGgacCGCUGCCGGGcgacgauCGCGC-AUCCGg -3'
miRNA:   3'- -GCaa-GUGGCGGCCCu------GCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 33422 0.67 0.481156
Target:  5'- uGUUCACaGCaGGGugGCggGCgGCCCGc -3'
miRNA:   3'- gCAAGUGgCGgCCCugCG--UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 49140 0.68 0.432898
Target:  5'- gGUUCGaaucCUGCCGGGG-GCACaACCUGc -3'
miRNA:   3'- gCAAGU----GGCGGCCCUgCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 31801 0.72 0.250033
Target:  5'- gGUUCGCCGuCCGGGucgggguccgggauGCGUGCgugcACCCGc -3'
miRNA:   3'- gCAAGUGGC-GGCCC--------------UGCGUGa---UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 47101 0.72 0.251924
Target:  5'- cCGcggC-CCGCCGGGcCGCGCcggGCCCGc -3'
miRNA:   3'- -GCaa-GuGGCGGCCCuGCGUGa--UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 26468 0.71 0.258315
Target:  5'- cCGcUUCACCGCCacGACGagcgACUGCCCGa -3'
miRNA:   3'- -GC-AAGUGGCGGccCUGCg---UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 42525 0.71 0.285206
Target:  5'- cCGUcgCACCGCCGGG-CGCAaccGCCg- -3'
miRNA:   3'- -GCAa-GUGGCGGCCCuGCGUga-UGGgc -5'
26389 3' -58.7 NC_005345.2 + 35457 0.71 0.285206
Target:  5'- --cUCGCCGCauuCGaGGGCGaGCUGCCCGa -3'
miRNA:   3'- gcaAGUGGCG---GC-CCUGCgUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 30581 0.71 0.292265
Target:  5'- uGUUCccgaCGCUGGG-CGCGC-ACCCGg -3'
miRNA:   3'- gCAAGug--GCGGCCCuGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40154 0.68 0.414398
Target:  5'- cCGUgcuGCCGUCGGGcAgGCACacGCCCGu -3'
miRNA:   3'- -GCAag-UGGCGGCCC-UgCGUGa-UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 15055 0.68 0.423588
Target:  5'- --gUCGCCGUCGcGGGCGC-CgGCCUGc -3'
miRNA:   3'- gcaAGUGGCGGC-CCUGCGuGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 29993 0.68 0.432898
Target:  5'- gCGUccUCgGCCGggguCCGGGugGCGCgccaugcgGCCCGc -3'
miRNA:   3'- -GCA--AG-UGGC----GGCCCugCGUGa-------UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.