miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 34995 0.69 0.345495
Target:  5'- gGUacUCGgCGCCGGGGCGCuGCggcgGCCaCGu -3'
miRNA:   3'- gCA--AGUgGCGGCCCUGCG-UGa---UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 29993 0.68 0.432898
Target:  5'- gCGUccUCgGCCGggguCCGGGugGCGCgccaugcgGCCCGc -3'
miRNA:   3'- -GCA--AG-UGGC----GGCCCugCGUGa-------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 15055 0.68 0.423588
Target:  5'- --gUCGCCGUCGcGGGCGC-CgGCCUGc -3'
miRNA:   3'- gcaAGUGGCGGC-CCUGCGuGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40154 0.68 0.414398
Target:  5'- cCGUgcuGCCGUCGGGcAgGCACacGCCCGu -3'
miRNA:   3'- -GCAag-UGGCGGCCC-UgCGUGa-UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40428 0.68 0.387579
Target:  5'- --aUCGCCGCCGGcGACGgACgagucgGCCa- -3'
miRNA:   3'- gcaAGUGGCGGCC-CUGCgUGa-----UGGgc -5'
26389 3' -58.7 NC_005345.2 + 19157 0.69 0.378897
Target:  5'- aCG-UCGUCGCCGGGccCGUacgGCUGCCCGu -3'
miRNA:   3'- -GCaAGUGGCGGCCCu-GCG---UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 35584 0.69 0.361094
Target:  5'- uCGUcgCGCCGCCGugcccguGGAUGUggucgacggacaGCUGCCCGc -3'
miRNA:   3'- -GCAa-GUGGCGGC-------CCUGCG------------UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 43816 0.69 0.356941
Target:  5'- --cUCGgCGuCCGGGucgaucaggcugaucACGUACUGCCCGg -3'
miRNA:   3'- gcaAGUgGC-GGCCC---------------UGCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 39700 0.69 0.345495
Target:  5'- cCGgaCACCGcCCGGGACGaGCUcggGCCaCGa -3'
miRNA:   3'- -GCaaGUGGC-GGCCCUGCgUGA---UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 49140 0.68 0.432898
Target:  5'- gGUUCGaaucCUGCCGGGG-GCACaACCUGc -3'
miRNA:   3'- gCAAGU----GGCGGCCCUgCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 10471 0.67 0.442327
Target:  5'- --gUCGgCGUagGGGACGaCGCUACCCu -3'
miRNA:   3'- gcaAGUgGCGg-CCCUGC-GUGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 21015 0.67 0.460556
Target:  5'- gCGUUCGCCGgcCCGGGugcguuccucggcACGCGCg--CCGg -3'
miRNA:   3'- -GCAAGUGGC--GGCCC-------------UGCGUGaugGGC- -5'
26389 3' -58.7 NC_005345.2 + 37698 0.66 0.521568
Target:  5'- cCGUggGCCGCCaguccugcGGGAuCGCGCUGCggcgcggcgCCGg -3'
miRNA:   3'- -GCAagUGGCGG--------CCCU-GCGUGAUG---------GGC- -5'
26389 3' -58.7 NC_005345.2 + 30203 0.66 0.521568
Target:  5'- uCGgacCGCUGCCGGGcgacgauCGCGC-AUCCGg -3'
miRNA:   3'- -GCaa-GUGGCGGCCCu------GCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 13418 0.66 0.521568
Target:  5'- uCGUUCgGCCGCCGcGGGCgagcaguuucgGCGCguccggcagcuUGCCCa -3'
miRNA:   3'- -GCAAG-UGGCGGC-CCUG-----------CGUG-----------AUGGGc -5'
26389 3' -58.7 NC_005345.2 + 46084 0.67 0.491122
Target:  5'- ----gGCCGCCGGGGCcuGCGCggacAUCCa -3'
miRNA:   3'- gcaagUGGCGGCCCUG--CGUGa---UGGGc -5'
26389 3' -58.7 NC_005345.2 + 39220 0.67 0.481156
Target:  5'- ----gACCGUCGGGccgACGCcgACUGCCCc -3'
miRNA:   3'- gcaagUGGCGGCCC---UGCG--UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 33422 0.67 0.481156
Target:  5'- uGUUCACaGCaGGGugGCggGCgGCCCGc -3'
miRNA:   3'- gCAAGUGgCGgCCCugCG--UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36478 0.67 0.461526
Target:  5'- cCGUgucggUGCCGUgGGGGCGCAgUucagccagugcGCCCGc -3'
miRNA:   3'- -GCAa----GUGGCGgCCCUGCGUgA-----------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34465 0.67 0.461526
Target:  5'- aCGggCACgGCCGGcccggcaucGGCGaCGCcGCCCGg -3'
miRNA:   3'- -GCaaGUGgCGGCC---------CUGC-GUGaUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.