miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 13418 0.66 0.521568
Target:  5'- uCGUUCgGCCGCCGcGGGCgagcaguuucgGCGCguccggcagcuUGCCCa -3'
miRNA:   3'- -GCAAG-UGGCGGC-CCUG-----------CGUG-----------AUGGGc -5'
26389 3' -58.7 NC_005345.2 + 46084 0.67 0.491122
Target:  5'- ----gGCCGCCGGGGCcuGCGCggacAUCCa -3'
miRNA:   3'- gcaagUGGCGGCCCUG--CGUGa---UGGGc -5'
26389 3' -58.7 NC_005345.2 + 39220 0.67 0.481156
Target:  5'- ----gACCGUCGGGccgACGCcgACUGCCCc -3'
miRNA:   3'- gcaagUGGCGGCCC---UGCG--UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 33422 0.67 0.481156
Target:  5'- uGUUCACaGCaGGGugGCggGCgGCCCGc -3'
miRNA:   3'- gCAAGUGgCGgCCCugCG--UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 36478 0.67 0.461526
Target:  5'- cCGUgucggUGCCGUgGGGGCGCAgUucagccagugcGCCCGc -3'
miRNA:   3'- -GCAa----GUGGCGgCCCUGCGUgA-----------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 34465 0.67 0.461526
Target:  5'- aCGggCACgGCCGGcccggcaucGGCGaCGCcGCCCGg -3'
miRNA:   3'- -GCaaGUGgCGGCC---------CUGC-GUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40154 0.68 0.414398
Target:  5'- cCGUgcuGCCGUCGGGcAgGCACacGCCCGu -3'
miRNA:   3'- -GCAag-UGGCGGCCC-UgCGUGa-UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 15055 0.68 0.423588
Target:  5'- --gUCGCCGUCGcGGGCGC-CgGCCUGc -3'
miRNA:   3'- gcaAGUGGCGGC-CCUGCGuGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 29993 0.68 0.432898
Target:  5'- gCGUccUCgGCCGggguCCGGGugGCGCgccaugcgGCCCGc -3'
miRNA:   3'- -GCA--AG-UGGC----GGCCCugCGUGa-------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 49140 0.68 0.432898
Target:  5'- gGUUCGaaucCUGCCGGGG-GCACaACCUGc -3'
miRNA:   3'- gCAAGU----GGCGGCCCUgCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 10471 0.67 0.442327
Target:  5'- --gUCGgCGUagGGGACGaCGCUACCCu -3'
miRNA:   3'- gcaAGUgGCGg-CCCUGC-GUGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 21015 0.67 0.460556
Target:  5'- gCGUUCGCCGgcCCGGGugcguuccucggcACGCGCg--CCGg -3'
miRNA:   3'- -GCAAGUGGC--GGCCC-------------UGCGUGaugGGC- -5'
26389 3' -58.7 NC_005345.2 + 3473 0.71 0.271493
Target:  5'- aCGgUCGCgauCCGGG-UGCACUGCCCGg -3'
miRNA:   3'- -GCaAGUGgc-GGCCCuGCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 40531 0.72 0.232939
Target:  5'- ---aCGCCGCCGGaACGUucgugaucgccgaGCUGCCCGa -3'
miRNA:   3'- gcaaGUGGCGGCCcUGCG-------------UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 5251 0.72 0.227077
Target:  5'- uGcgCGCCGCCguggcgaugcagcGGGACGCGCUccGCCgCGg -3'
miRNA:   3'- gCaaGUGGCGG-------------CCCUGCGUGA--UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 18930 0.74 0.185048
Target:  5'- --cUCACCGCC-GGAUGCGCgaucgucGCCCGg -3'
miRNA:   3'- gcaAGUGGCGGcCCUGCGUGa------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 33020 0.75 0.138021
Target:  5'- ---gUACCGCCGGGACGCcgccggccggccGCUGCUCa -3'
miRNA:   3'- gcaaGUGGCGGCCCUGCG------------UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 12878 0.76 0.120493
Target:  5'- --cUCGCCGCCGGGugGCcGCUcGCCuCGa -3'
miRNA:   3'- gcaAGUGGCGGCCCugCG-UGA-UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 17736 0.79 0.079596
Target:  5'- --cUCAUCGCCGGGuGCGCACUcGCCCu -3'
miRNA:   3'- gcaAGUGGCGGCCC-UGCGUGA-UGGGc -5'
26389 3' -58.7 NC_005345.2 + 42124 0.66 0.552719
Target:  5'- cCGUUCacgaaggggACCGCacucaCGGuGGCGaCGCUGCCUGu -3'
miRNA:   3'- -GCAAG---------UGGCG-----GCC-CUGC-GUGAUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.