miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 39696 0.67 0.451871
Target:  5'- aGUUCGCgC-CCGGGugGCACgagagcgACCg- -3'
miRNA:   3'- gCAAGUG-GcGGCCCugCGUGa------UGGgc -5'
26389 3' -58.7 NC_005345.2 + 17013 0.67 0.458618
Target:  5'- gCGggCuGCCGCCGaGGcGaucgcccucgcaccCGCGCUGCCCGa -3'
miRNA:   3'- -GCaaG-UGGCGGC-CC-U--------------GCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 41631 0.67 0.461526
Target:  5'- aCGacCGCCGCCGGca-GCAC-GCCCa -3'
miRNA:   3'- -GCaaGUGGCGGCCcugCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 15990 0.67 0.471289
Target:  5'- cCGUaccuCUGUgGGcGACGUGCUGCCCGa -3'
miRNA:   3'- -GCAagu-GGCGgCC-CUGCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 3568 0.67 0.481156
Target:  5'- cCGUUCGCgGCCcccGGcCGCAaccgGCCCGc -3'
miRNA:   3'- -GCAAGUGgCGGc--CCuGCGUga--UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 43665 0.69 0.353644
Target:  5'- uCGUgccugcCGCCGCCGGGugGCugauCaGCCUc -3'
miRNA:   3'- -GCAa-----GUGGCGGCCCugCGu---GaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 18556 0.69 0.353644
Target:  5'- gGggCGCuCGCCGGG-UGCGC-GCCCa -3'
miRNA:   3'- gCaaGUG-GCGGCCCuGCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 20412 0.7 0.337481
Target:  5'- cCGUaccUC-CCGCCGuGGGCGCcguacCUGCCCc -3'
miRNA:   3'- -GCA---AGuGGCGGC-CCUGCGu----GAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 17736 0.79 0.079596
Target:  5'- --cUCAUCGCCGGGuGCGCACUcGCCCu -3'
miRNA:   3'- gcaAGUGGCGGCCC-UGCGUGA-UGGGc -5'
26389 3' -58.7 NC_005345.2 + 12878 0.76 0.120493
Target:  5'- --cUCGCCGCCGGGugGCcGCUcGCCuCGa -3'
miRNA:   3'- gcaAGUGGCGGCCCugCG-UGA-UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 33020 0.75 0.138021
Target:  5'- ---gUACCGCCGGGACGCcgccggccggccGCUGCUCa -3'
miRNA:   3'- gcaaGUGGCGGCCCUGCG------------UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 18930 0.74 0.185048
Target:  5'- --cUCACCGCC-GGAUGCGCgaucgucGCCCGg -3'
miRNA:   3'- gcaAGUGGCGGcCCUGCGUGa------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 5251 0.72 0.227077
Target:  5'- uGcgCGCCGCCguggcgaugcagcGGGACGCGCUccGCCgCGg -3'
miRNA:   3'- gCaaGUGGCGG-------------CCCUGCGUGA--UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 40531 0.72 0.232939
Target:  5'- ---aCGCCGCCGGaACGUucgugaucgccgaGCUGCCCGa -3'
miRNA:   3'- gcaaGUGGCGGCCcUGCG-------------UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 3473 0.71 0.271493
Target:  5'- aCGgUCGCgauCCGGG-UGCACUGCCCGg -3'
miRNA:   3'- -GCaAGUGgc-GGCCCuGCGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 23354 0.71 0.285206
Target:  5'- cCGUgCugCGCUGGGagcgggccgagGCGCccgaGCUGCCCGa -3'
miRNA:   3'- -GCAaGugGCGGCCC-----------UGCG----UGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 10673 0.71 0.292265
Target:  5'- gGggCGCgGCgCGGGaagugcccGCGCugUGCCCGg -3'
miRNA:   3'- gCaaGUGgCG-GCCC--------UGCGugAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 16586 0.7 0.306791
Target:  5'- gCGUUCAaCGCUGcGGugGCGugGCCCGa -3'
miRNA:   3'- -GCAAGUgGCGGC-CCugCGUgaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 17299 0.7 0.306791
Target:  5'- aCGUUCGCCGCaGGuGCGCcGC-ACCCGc -3'
miRNA:   3'- -GCAAGUGGCGgCCcUGCG-UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 31302 0.7 0.329603
Target:  5'- -aUUC-CCGCCGGG-CGCuGCUGCgCGg -3'
miRNA:   3'- gcAAGuGGCGGCCCuGCG-UGAUGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.