miRNA display CGI


Results 61 - 78 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 3' -58.7 NC_005345.2 + 5251 0.72 0.227077
Target:  5'- uGcgCGCCGCCguggcgaugcagcGGGACGCGCUccGCCgCGg -3'
miRNA:   3'- gCaaGUGGCGG-------------CCCUGCGUGA--UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 18930 0.74 0.185048
Target:  5'- --cUCACCGCC-GGAUGCGCgaucgucGCCCGg -3'
miRNA:   3'- gcaAGUGGCGGcCCUGCGUGa------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 33020 0.75 0.138021
Target:  5'- ---gUACCGCCGGGACGCcgccggccggccGCUGCUCa -3'
miRNA:   3'- gcaaGUGGCGGCCCUGCG------------UGAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 12878 0.76 0.120493
Target:  5'- --cUCGCCGCCGGGugGCcGCUcGCCuCGa -3'
miRNA:   3'- gcaAGUGGCGGCCCugCG-UGA-UGG-GC- -5'
26389 3' -58.7 NC_005345.2 + 17736 0.79 0.079596
Target:  5'- --cUCAUCGCCGGGuGCGCACUcGCCCu -3'
miRNA:   3'- gcaAGUGGCGGCCC-UGCGUGA-UGGGc -5'
26389 3' -58.7 NC_005345.2 + 16586 0.7 0.306791
Target:  5'- gCGUUCAaCGCUGcGGugGCGugGCCCGa -3'
miRNA:   3'- -GCAAGUgGCGGC-CCugCGUgaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 17299 0.7 0.306791
Target:  5'- aCGUUCGCCGCaGGuGCGCcGC-ACCCGc -3'
miRNA:   3'- -GCAAGUGGCGgCCcUGCG-UGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 31302 0.7 0.329603
Target:  5'- -aUUC-CCGCCGGG-CGCuGCUGCgCGg -3'
miRNA:   3'- gcAAGuGGCGGCCCuGCG-UGAUGgGC- -5'
26389 3' -58.7 NC_005345.2 + 40818 0.68 0.405332
Target:  5'- gCGUgcacCGCCGCCGGaACGCuGCUGCUg- -3'
miRNA:   3'- -GCAa---GUGGCGGCCcUGCG-UGAUGGgc -5'
26389 3' -58.7 NC_005345.2 + 27128 0.68 0.396392
Target:  5'- aCGgcggCACCgGCCGGcGuCGaGCUGCCCGa -3'
miRNA:   3'- -GCaa--GUGG-CGGCC-CuGCgUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 19118 0.68 0.395505
Target:  5'- gCGcUCACCGCaugguggcugCGGGccgcaugGCGCGCcACCCGg -3'
miRNA:   3'- -GCaAGUGGCG----------GCCC-------UGCGUGaUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 29239 0.68 0.387579
Target:  5'- cCGUUCAUCGCCcGcGAUGCGCagcggcucGCCCGc -3'
miRNA:   3'- -GCAAGUGGCGGcC-CUGCGUGa-------UGGGC- -5'
26389 3' -58.7 NC_005345.2 + 18971 0.68 0.387579
Target:  5'- gCGcUCGCCGCaUGGGuCGCcGCUGgCCGg -3'
miRNA:   3'- -GCaAGUGGCG-GCCCuGCG-UGAUgGGC- -5'
26389 3' -58.7 NC_005345.2 + 46226 0.69 0.378897
Target:  5'- aCGUcCugCGuuGGG-C-CGCUGCCCGg -3'
miRNA:   3'- -GCAaGugGCggCCCuGcGUGAUGGGC- -5'
26389 3' -58.7 NC_005345.2 + 43665 0.69 0.353644
Target:  5'- uCGUgccugcCGCCGCCGGGugGCugauCaGCCUc -3'
miRNA:   3'- -GCAa-----GUGGCGGCCCugCGu---GaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 18556 0.69 0.353644
Target:  5'- gGggCGCuCGCCGGG-UGCGC-GCCCa -3'
miRNA:   3'- gCaaGUG-GCGGCCCuGCGUGaUGGGc -5'
26389 3' -58.7 NC_005345.2 + 20412 0.7 0.337481
Target:  5'- cCGUaccUC-CCGCCGuGGGCGCcguacCUGCCCc -3'
miRNA:   3'- -GCA---AGuGGCGGC-CCUGCGu----GAUGGGc -5'
26389 3' -58.7 NC_005345.2 + 28611 1.1 0.000425
Target:  5'- aCGUUCACCGCCGGGACGCACUACCCGg -3'
miRNA:   3'- -GCAAGUGGCGGCCCUGCGUGAUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.