miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26389 5' -58.6 NC_005345.2 + 39034 0.67 0.374921
Target:  5'- cUCGGGgaugGGGCAgucgucgcgcaugugCCGCUCGGCc- -3'
miRNA:   3'- aAGUCCag--CCCGUaa-------------GGCGAGCCGuu -5'
26389 5' -58.6 NC_005345.2 + 1225 0.67 0.36874
Target:  5'- cUUCGGGUCGGcGUAcgUCCGUUC-GCGGa -3'
miRNA:   3'- -AAGUCCAGCC-CGUa-AGGCGAGcCGUU- -5'
26389 5' -58.6 NC_005345.2 + 35543 0.67 0.360033
Target:  5'- -gCGGGgcUCGGGCA--CCGC-CGGCGGg -3'
miRNA:   3'- aaGUCC--AGCCCGUaaGGCGaGCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 43620 0.67 0.360033
Target:  5'- aUCAGGUCGGGCcccCCGgCggggucgCGGUAGu -3'
miRNA:   3'- aAGUCCAGCCCGuaaGGC-Ga------GCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 24902 0.68 0.326657
Target:  5'- gUC-GGaCGGGCAccugUUCaCGCUCGGCGu -3'
miRNA:   3'- aAGuCCaGCCCGU----AAG-GCGAGCCGUu -5'
26389 5' -58.6 NC_005345.2 + 34635 0.68 0.310849
Target:  5'- -aCGGGgCGuGGCugcugCCGCUCGGCGu -3'
miRNA:   3'- aaGUCCaGC-CCGuaa--GGCGAGCCGUu -5'
26389 5' -58.6 NC_005345.2 + 38272 0.69 0.303167
Target:  5'- -gCGGGUgCGGGCAcgggacgcgCCGCgugCGGCAGu -3'
miRNA:   3'- aaGUCCA-GCCCGUaa-------GGCGa--GCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 23592 0.7 0.246941
Target:  5'- -gCGGGUCGcGGCGUUCgGCgcgacgcCGGCGGa -3'
miRNA:   3'- aaGUCCAGC-CCGUAAGgCGa------GCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 19102 0.7 0.24501
Target:  5'- gUCGGuGUCgucggcccacgcguGGGCGccgaUCCGCUCGGCGAc -3'
miRNA:   3'- aAGUC-CAG--------------CCCGUa---AGGCGAGCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 25499 0.74 0.121227
Target:  5'- -cCuGGUCGGcGCcgUCCGcCUCGGCGAa -3'
miRNA:   3'- aaGuCCAGCC-CGuaAGGC-GAGCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 42389 0.75 0.108197
Target:  5'- --gAGGUCGGGCAUgUCCGCgagcaucaCGGCGAu -3'
miRNA:   3'- aagUCCAGCCCGUA-AGGCGa-------GCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 8601 0.76 0.099298
Target:  5'- -gCAGGUCGGGCA----GCUCGGCGAu -3'
miRNA:   3'- aaGUCCAGCCCGUaaggCGAGCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 4361 0.79 0.057184
Target:  5'- cUCGGG-CGGGCGggCCGCUCGGUGGg -3'
miRNA:   3'- aAGUCCaGCCCGUaaGGCGAGCCGUU- -5'
26389 5' -58.6 NC_005345.2 + 28646 1.04 0.000735
Target:  5'- uUUCAGGUCGGGCAUUCCGCUCGGCAAg -3'
miRNA:   3'- -AAGUCCAGCCCGUAAGGCGAGCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.