miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26390 5' -59.2 NC_005345.2 + 27953 0.66 0.471457
Target:  5'- gGCGGaGCGCgugaacccgaaCgGCGGU--GCGCCGUCg -3'
miRNA:   3'- aCGUC-CGCG-----------GgCGCCAguUGUGGUAG- -5'
26390 5' -59.2 NC_005345.2 + 30012 0.66 0.471457
Target:  5'- gGguGGCGCgCCauGCGGcccgCAGcCACCAUg -3'
miRNA:   3'- aCguCCGCG-GG--CGCCa---GUU-GUGGUAg -5'
26390 5' -59.2 NC_005345.2 + 42493 0.66 0.471457
Target:  5'- gGCaAGGCuUCCG-GGUCAgcugcucggugACGCCGUCg -3'
miRNA:   3'- aCG-UCCGcGGGCgCCAGU-----------UGUGGUAG- -5'
26390 5' -59.2 NC_005345.2 + 8428 0.66 0.470457
Target:  5'- gGCuGGaCGCCgaGCGGUCGguguggacggacgGCACCGg- -3'
miRNA:   3'- aCGuCC-GCGGg-CGCCAGU-------------UGUGGUag -5'
26390 5' -59.2 NC_005345.2 + 33294 0.66 0.465475
Target:  5'- aUGCGGGCGgCgacgaucagaaccugCGCGGUgUAGCucggGCCGUCg -3'
miRNA:   3'- -ACGUCCGCgG---------------GCGCCA-GUUG----UGGUAG- -5'
26390 5' -59.2 NC_005345.2 + 16012 0.66 0.461508
Target:  5'- aGCAGGUGCU--CGGUCAguccccacaGC-CCGUCg -3'
miRNA:   3'- aCGUCCGCGGgcGCCAGU---------UGuGGUAG- -5'
26390 5' -59.2 NC_005345.2 + 23901 0.66 0.461508
Target:  5'- aGCAGGUGCCgcacgaGCGc-CGACgaGCCGUCg -3'
miRNA:   3'- aCGUCCGCGGg-----CGCcaGUUG--UGGUAG- -5'
26390 5' -59.2 NC_005345.2 + 29327 0.66 0.461508
Target:  5'- cUGUcGGcCGcCCCGgGuGUCAGCGCuCGUCg -3'
miRNA:   3'- -ACGuCC-GC-GGGCgC-CAGUUGUG-GUAG- -5'
26390 5' -59.2 NC_005345.2 + 3345 0.66 0.461508
Target:  5'- cUGCGGGCGCCgcguucgaucgCGCGG--AGCAUCGa- -3'
miRNA:   3'- -ACGUCCGCGG-----------GCGCCagUUGUGGUag -5'
26390 5' -59.2 NC_005345.2 + 6416 0.66 0.461508
Target:  5'- cGCGGGCcCgCCGuCGGUCGGCGagUgGUCg -3'
miRNA:   3'- aCGUCCGcG-GGC-GCCAGUUGU--GgUAG- -5'
26390 5' -59.2 NC_005345.2 + 43924 0.66 0.461508
Target:  5'- cGCGGGCacCCCGaCGGcgugUAGCGCCGg- -3'
miRNA:   3'- aCGUCCGc-GGGC-GCCa---GUUGUGGUag -5'
26390 5' -59.2 NC_005345.2 + 20606 0.66 0.46052
Target:  5'- gGCGGGCGCUCGCaagucucGG-CGACgggGCgAUCg -3'
miRNA:   3'- aCGUCCGCGGGCG-------CCaGUUG---UGgUAG- -5'
26390 5' -59.2 NC_005345.2 + 32776 0.66 0.451672
Target:  5'- gGC-GGCGCagaGCGG-CGACGCCGc- -3'
miRNA:   3'- aCGuCCGCGgg-CGCCaGUUGUGGUag -5'
26390 5' -59.2 NC_005345.2 + 10157 0.66 0.451672
Target:  5'- cUGCGGaGCGCCCGCcgcaagcaacaGG-CAACGCgAa- -3'
miRNA:   3'- -ACGUC-CGCGGGCG-----------CCaGUUGUGgUag -5'
26390 5' -59.2 NC_005345.2 + 27116 0.66 0.451672
Target:  5'- aUGCucGGCGCCa-CGG-CGGCACCGg- -3'
miRNA:   3'- -ACGu-CCGCGGgcGCCaGUUGUGGUag -5'
26390 5' -59.2 NC_005345.2 + 20074 0.66 0.451672
Target:  5'- aGCGGuaGCUCGCGGUCucGGCgaGCCcgCc -3'
miRNA:   3'- aCGUCcgCGGGCGCCAG--UUG--UGGuaG- -5'
26390 5' -59.2 NC_005345.2 + 24383 0.66 0.451672
Target:  5'- cGC-GGCcaaGCUCgGCGG-CAGCAUCAUCg -3'
miRNA:   3'- aCGuCCG---CGGG-CGCCaGUUGUGGUAG- -5'
26390 5' -59.2 NC_005345.2 + 14907 0.66 0.441951
Target:  5'- aGCGGGCGaagcgggCCGCGGcgcggCGGCugCAg- -3'
miRNA:   3'- aCGUCCGCg------GGCGCCa----GUUGugGUag -5'
26390 5' -59.2 NC_005345.2 + 26547 0.66 0.441951
Target:  5'- cGCAGGCGCagCGCaugCAACGCCc-- -3'
miRNA:   3'- aCGUCCGCGg-GCGccaGUUGUGGuag -5'
26390 5' -59.2 NC_005345.2 + 41010 0.66 0.441951
Target:  5'- -aCGGGCGCa-GCGGcCAAgaGCCGUCg -3'
miRNA:   3'- acGUCCGCGggCGCCaGUUg-UGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.