miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26391 3' -52.2 NC_005345.2 + 43724 0.66 0.88398
Target:  5'- gCGcCGCCGAagaacUCGGCGAgacgCUCGGc--- -3'
miRNA:   3'- -GCuGCGGCU-----AGUCGCUa---GAGCUuagc -5'
26391 3' -52.2 NC_005345.2 + 27190 0.66 0.88398
Target:  5'- uCGGCGCgGG-CcGUGAUCggcagCGggUCGg -3'
miRNA:   3'- -GCUGCGgCUaGuCGCUAGa----GCuuAGC- -5'
26391 3' -52.2 NC_005345.2 + 30647 0.66 0.88398
Target:  5'- gGACGCCGAgcgCAGCGccuuugC-CGAAcgCGg -3'
miRNA:   3'- gCUGCGGCUa--GUCGCua----GaGCUUa-GC- -5'
26391 3' -52.2 NC_005345.2 + 29449 0.66 0.88398
Target:  5'- uCGGCGUCGA--GGCGGUaCUCG--UCGg -3'
miRNA:   3'- -GCUGCGGCUagUCGCUA-GAGCuuAGC- -5'
26391 3' -52.2 NC_005345.2 + 22842 0.66 0.88398
Target:  5'- uCGACGaCGGUCAuccCGGUCgcCGggUCGg -3'
miRNA:   3'- -GCUGCgGCUAGUc--GCUAGa-GCuuAGC- -5'
26391 3' -52.2 NC_005345.2 + 42470 0.66 0.876261
Target:  5'- uCGACGCCGA--GGCcGUCgUCGAggagAUCGc -3'
miRNA:   3'- -GCUGCGGCUagUCGcUAG-AGCU----UAGC- -5'
26391 3' -52.2 NC_005345.2 + 40227 0.66 0.868281
Target:  5'- aCGGUGCCGGUCGgGCaGUUcCGGAUCGa -3'
miRNA:   3'- -GCUGCGGCUAGU-CGcUAGaGCUUAGC- -5'
26391 3' -52.2 NC_005345.2 + 7301 0.66 0.865838
Target:  5'- aCGACGCCGAggUCguccccgaugagucGGCGGacgC-CGAGUCGc -3'
miRNA:   3'- -GCUGCGGCU--AG--------------UCGCUa--GaGCUUAGC- -5'
26391 3' -52.2 NC_005345.2 + 38035 0.66 0.86005
Target:  5'- gGACGUCGAcUCuGUGGcaUCGGAUCGc -3'
miRNA:   3'- gCUGCGGCU-AGuCGCUagAGCUUAGC- -5'
26391 3' -52.2 NC_005345.2 + 16046 0.66 0.86005
Target:  5'- uGuCGCCGAgc-GCGAUC-CGggUCc -3'
miRNA:   3'- gCuGCGGCUaguCGCUAGaGCuuAGc -5'
26391 3' -52.2 NC_005345.2 + 8177 0.66 0.86005
Target:  5'- cCGACGCCGA--GGuCGAUCgCGAAa-- -3'
miRNA:   3'- -GCUGCGGCUagUC-GCUAGaGCUUagc -5'
26391 3' -52.2 NC_005345.2 + 3875 0.66 0.858374
Target:  5'- gGACGCCGAgugccugcagcgCGGCGAgggCGGggCGg -3'
miRNA:   3'- gCUGCGGCUa-----------GUCGCUagaGCUuaGC- -5'
26391 3' -52.2 NC_005345.2 + 43290 0.66 0.851573
Target:  5'- aCGACGUCc-UCGGCGAggUCGAcgCGc -3'
miRNA:   3'- -GCUGCGGcuAGUCGCUagAGCUuaGC- -5'
26391 3' -52.2 NC_005345.2 + 14805 0.66 0.851573
Target:  5'- uCGACGUCGAgCGGCGggCgCGGgugugGUCGa -3'
miRNA:   3'- -GCUGCGGCUaGUCGCuaGaGCU-----UAGC- -5'
26391 3' -52.2 NC_005345.2 + 19327 0.66 0.851573
Target:  5'- aGugGCCGAUCuGCGGgcccgguuggacuccCUCGGgauccccGUCGa -3'
miRNA:   3'- gCugCGGCUAGuCGCUa--------------GAGCU-------UAGC- -5'
26391 3' -52.2 NC_005345.2 + 22299 0.66 0.850712
Target:  5'- gCGACGUgGGUCGaggugucGCGGUCcgguUCGggUCu -3'
miRNA:   3'- -GCUGCGgCUAGU-------CGCUAG----AGCuuAGc -5'
26391 3' -52.2 NC_005345.2 + 8729 0.67 0.842859
Target:  5'- cCGuCGCCGG-CGGCGAUCcguaCGGacgcGUCGg -3'
miRNA:   3'- -GCuGCGGCUaGUCGCUAGa---GCU----UAGC- -5'
26391 3' -52.2 NC_005345.2 + 35048 0.67 0.842859
Target:  5'- uGuCGCCGGuguucUCGGCGAUCUgGA--CGg -3'
miRNA:   3'- gCuGCGGCU-----AGUCGCUAGAgCUuaGC- -5'
26391 3' -52.2 NC_005345.2 + 5423 0.67 0.842859
Target:  5'- gCGucuCGCCGAguucuUCGGCGGcgCcCGggUCGg -3'
miRNA:   3'- -GCu--GCGGCU-----AGUCGCUa-GaGCuuAGC- -5'
26391 3' -52.2 NC_005345.2 + 31453 0.67 0.842859
Target:  5'- cCGuCGCCGAggcCGGCGcgguUCguaCGGAUCGa -3'
miRNA:   3'- -GCuGCGGCUa--GUCGCu---AGa--GCUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.