miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26391 5' -54.7 NC_005345.2 + 18032 0.66 0.743118
Target:  5'- gGCGaGCGcAGGaACGCGGccacguugcgGCGGGUGGUg -3'
miRNA:   3'- gUGCaUGC-UCC-UGUGCU----------UGCCCGUCA- -5'
26391 5' -54.7 NC_005345.2 + 46782 0.66 0.743118
Target:  5'- gGCccGCGAGGuCGCGAcCGGGCu-- -3'
miRNA:   3'- gUGcaUGCUCCuGUGCUuGCCCGuca -5'
26391 5' -54.7 NC_005345.2 + 26999 0.66 0.732546
Target:  5'- aGCcUGCG-GGACGCGGACGcGGUcgAGUu -3'
miRNA:   3'- gUGcAUGCuCCUGUGCUUGC-CCG--UCA- -5'
26391 5' -54.7 NC_005345.2 + 41266 0.66 0.732546
Target:  5'- -cCGUGuCGGGGAC-CG-GCGGGUGGg -3'
miRNA:   3'- guGCAU-GCUCCUGuGCuUGCCCGUCa -5'
26391 5' -54.7 NC_005345.2 + 10591 0.66 0.732546
Target:  5'- --aGUACGAGcgguGGCACGAgcaGCGGcGCGGc -3'
miRNA:   3'- gugCAUGCUC----CUGUGCU---UGCC-CGUCa -5'
26391 5' -54.7 NC_005345.2 + 20987 0.66 0.732546
Target:  5'- cCGCG-GCGAGGaACGcCGAcCGGGCGa- -3'
miRNA:   3'- -GUGCaUGCUCC-UGU-GCUuGCCCGUca -5'
26391 5' -54.7 NC_005345.2 + 34688 0.66 0.731483
Target:  5'- gGCGU-CGGGGAUgccgagcgagucgGCGAGCGaGCAGa -3'
miRNA:   3'- gUGCAuGCUCCUG-------------UGCUUGCcCGUCa -5'
26391 5' -54.7 NC_005345.2 + 38222 0.66 0.721871
Target:  5'- gACGgggggaACGGGGACgcGCGGAcCGGuGCAGg -3'
miRNA:   3'- gUGCa-----UGCUCCUG--UGCUU-GCC-CGUCa -5'
26391 5' -54.7 NC_005345.2 + 6529 0.66 0.700263
Target:  5'- gCACGggGCG-GGGCG-GGGCGgGGCGGUg -3'
miRNA:   3'- -GUGCa-UGCuCCUGUgCUUGC-CCGUCA- -5'
26391 5' -54.7 NC_005345.2 + 28240 0.66 0.700263
Target:  5'- aCAUGU-CGGGGGCGCugucAAUcgGGGCAGUg -3'
miRNA:   3'- -GUGCAuGCUCCUGUGc---UUG--CCCGUCA- -5'
26391 5' -54.7 NC_005345.2 + 33882 0.67 0.689353
Target:  5'- gACGUG-GGGGACgccgcucgcGCGGcCGGGCAGc -3'
miRNA:   3'- gUGCAUgCUCCUG---------UGCUuGCCCGUCa -5'
26391 5' -54.7 NC_005345.2 + 33283 0.67 0.689353
Target:  5'- cCAUGU-CGAGGAUGCGGGC-GGCGa- -3'
miRNA:   3'- -GUGCAuGCUCCUGUGCUUGcCCGUca -5'
26391 5' -54.7 NC_005345.2 + 7113 0.67 0.678386
Target:  5'- cCGCG-ACGuguGGcgccGCGCGAAcCGGGCGGg -3'
miRNA:   3'- -GUGCaUGCu--CC----UGUGCUU-GCCCGUCa -5'
26391 5' -54.7 NC_005345.2 + 6647 0.67 0.656331
Target:  5'- gCGCGga-GAGGGCACGGGCGaacguGGCGa- -3'
miRNA:   3'- -GUGCaugCUCCUGUGCUUGC-----CCGUca -5'
26391 5' -54.7 NC_005345.2 + 18151 0.67 0.656331
Target:  5'- gCACGUAgGccGGAC-CGGGCGGGCcGa -3'
miRNA:   3'- -GUGCAUgCu-CCUGuGCUUGCCCGuCa -5'
26391 5' -54.7 NC_005345.2 + 6560 0.67 0.645264
Target:  5'- gACGUggcuacGCGGgcGGACcCGuGACGGGCAGUu -3'
miRNA:   3'- gUGCA------UGCU--CCUGuGC-UUGCCCGUCA- -5'
26391 5' -54.7 NC_005345.2 + 37487 0.67 0.645264
Target:  5'- aGCgGUACGAcguucccgccGGGCGCGGgcuGCGGcGCGGUg -3'
miRNA:   3'- gUG-CAUGCU----------CCUGUGCU---UGCC-CGUCA- -5'
26391 5' -54.7 NC_005345.2 + 19068 0.67 0.645264
Target:  5'- uCGCcUACGGGGucuACGCGAucguGCGGGCcGUg -3'
miRNA:   3'- -GUGcAUGCUCC---UGUGCU----UGCCCGuCA- -5'
26391 5' -54.7 NC_005345.2 + 31866 0.67 0.645264
Target:  5'- gGCGaACGuGGGCACGggUucgGGuGCGGUg -3'
miRNA:   3'- gUGCaUGCuCCUGUGCuuG---CC-CGUCA- -5'
26391 5' -54.7 NC_005345.2 + 40860 0.67 0.644156
Target:  5'- uCACGUGCagGAGGGCGgccgcuuCGAcCGGGCAc- -3'
miRNA:   3'- -GUGCAUG--CUCCUGU-------GCUuGCCCGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.