miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26392 3' -57.4 NC_005345.2 + 45134 0.66 0.544339
Target:  5'- aGggGcGGGaCAacgcggacgcGCUGCGGCuCGUCCGAc -3'
miRNA:   3'- -CuuUuCCCaGU----------CGACGUCG-GCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 22758 0.66 0.522894
Target:  5'- -----aGGUCGGUcGCgucgAGCUGCCCGAa -3'
miRNA:   3'- cuuuucCCAGUCGaCG----UCGGCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 47713 0.66 0.501782
Target:  5'- --uGAGGGcgaagAGCUGCGGCUGCCa-- -3'
miRNA:   3'- cuuUUCCCag---UCGACGUCGGCGGgcu -5'
26392 3' -57.4 NC_005345.2 + 9968 0.66 0.501782
Target:  5'- ----cGGGUUcgGGCUGgGGuCCGCCuCGAc -3'
miRNA:   3'- cuuuuCCCAG--UCGACgUC-GGCGG-GCU- -5'
26392 3' -57.4 NC_005345.2 + 20206 0.67 0.491367
Target:  5'- gGAuAAGGcccGUCAGCUGCGuCgGCUCGAu -3'
miRNA:   3'- -CUuUUCC---CAGUCGACGUcGgCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 34542 0.67 0.491367
Target:  5'- cGAAGgucGGGGcgCuGCUGCuggaaaagguGCCGCCCGc -3'
miRNA:   3'- -CUUU---UCCCa-GuCGACGu---------CGGCGGGCu -5'
26392 3' -57.4 NC_005345.2 + 35943 0.67 0.481053
Target:  5'- ---cGGGGUguGCUcgccgcgcggGCuGCCGCUCGGg -3'
miRNA:   3'- cuuuUCCCAguCGA----------CGuCGGCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 46062 0.67 0.470846
Target:  5'- --cGAGGGUCgaucaGGCgGCcggGGCCGCCgGGg -3'
miRNA:   3'- cuuUUCCCAG-----UCGaCG---UCGGCGGgCU- -5'
26392 3' -57.4 NC_005345.2 + 16856 0.67 0.469831
Target:  5'- ----cGGGcgCAGCUGCAGgCGCgguacggCCGAg -3'
miRNA:   3'- cuuuuCCCa-GUCGACGUCgGCG-------GGCU- -5'
26392 3' -57.4 NC_005345.2 + 19418 0.67 0.450768
Target:  5'- -----cGGUCGGCUGC-GCCGCgUCGGu -3'
miRNA:   3'- cuuuucCCAGUCGACGuCGGCG-GGCU- -5'
26392 3' -57.4 NC_005345.2 + 42504 0.68 0.430203
Target:  5'- ----cGGGUCAGCUGCucggugacGCCGUcgcaccgCCGGg -3'
miRNA:   3'- cuuuuCCCAGUCGACGu-------CGGCG-------GGCU- -5'
26392 3' -57.4 NC_005345.2 + 19006 0.68 0.393522
Target:  5'- cGAGcGGGG-CGGCgccucgacGUcGCCGCCCGAg -3'
miRNA:   3'- -CUUuUCCCaGUCGa-------CGuCGGCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 20525 0.69 0.375514
Target:  5'- ----cGGGaUCGGcCUGCGGCgacaCGCCCGGc -3'
miRNA:   3'- cuuuuCCC-AGUC-GACGUCG----GCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 45570 0.69 0.366722
Target:  5'- cGggGcGGGcCGGUUGCGGCCggggGCCgCGAa -3'
miRNA:   3'- -CuuUuCCCaGUCGACGUCGG----CGG-GCU- -5'
26392 3' -57.4 NC_005345.2 + 41027 0.69 0.358072
Target:  5'- aAAGAGGGggCgugagaugagAGCUGCGGCCGCacugcucgCCGAa -3'
miRNA:   3'- cUUUUCCCa-G----------UCGACGUCGGCG--------GGCU- -5'
26392 3' -57.4 NC_005345.2 + 19049 0.69 0.358072
Target:  5'- --cGGGGGUCGGCgaaccCGGCCGUCuCGGg -3'
miRNA:   3'- cuuUUCCCAGUCGac---GUCGGCGG-GCU- -5'
26392 3' -57.4 NC_005345.2 + 46374 0.69 0.358072
Target:  5'- -cGAAGGG-CGGCgGCGagcagccacGCCGUCCGAa -3'
miRNA:   3'- cuUUUCCCaGUCGaCGU---------CGGCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 21444 0.69 0.341205
Target:  5'- --uAGGGGUUgcagGGCUGCcgugucGGCgCGCCCGGu -3'
miRNA:   3'- cuuUUCCCAG----UCGACG------UCG-GCGGGCU- -5'
26392 3' -57.4 NC_005345.2 + 15251 0.69 0.341205
Target:  5'- ----cGGaUCAGCUGCccGGCCGCgCGAg -3'
miRNA:   3'- cuuuuCCcAGUCGACG--UCGGCGgGCU- -5'
26392 3' -57.4 NC_005345.2 + 2650 0.7 0.32492
Target:  5'- ----cGGGUCaaAGCUcGCAGCgGCCaCGAa -3'
miRNA:   3'- cuuuuCCCAG--UCGA-CGUCGgCGG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.