miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26392 5' -61.1 NC_005345.2 + 31647 0.66 0.463656
Target:  5'- -gCCGGACGCUgcgaguucguGAcCGCgGCGUACaagaUCGg -3'
miRNA:   3'- ggGGCCUGCGG----------CU-GCGgCGCAUG----AGC- -5'
26392 5' -61.1 NC_005345.2 + 12884 0.66 0.463656
Target:  5'- gCCgGGugGCCGcucgccucgauCGCCGCGacggccgccUACUCc -3'
miRNA:   3'- gGGgCCugCGGCu----------GCGGCGC---------AUGAGc -5'
26392 5' -61.1 NC_005345.2 + 10052 0.66 0.463656
Target:  5'- gCCgaGGACGCgaucggguuCGACGCCGuCGaggcGCUCGu -3'
miRNA:   3'- -GGggCCUGCG---------GCUGCGGC-GCa---UGAGC- -5'
26392 5' -61.1 NC_005345.2 + 3604 0.66 0.463656
Target:  5'- aCCUCGGcCGCUGuCGCC-C-UGCUCGc -3'
miRNA:   3'- -GGGGCCuGCGGCuGCGGcGcAUGAGC- -5'
26392 5' -61.1 NC_005345.2 + 11716 0.66 0.463656
Target:  5'- aCCagCGG--GCCGcCGCCGCGUaccaACUCGc -3'
miRNA:   3'- -GGg-GCCugCGGCuGCGGCGCA----UGAGC- -5'
26392 5' -61.1 NC_005345.2 + 40687 0.66 0.463656
Target:  5'- aCCCCGaaacgggagucGCGaCCG-CGCC-CGUGCUCGu -3'
miRNA:   3'- -GGGGCc----------UGC-GGCuGCGGcGCAUGAGC- -5'
26392 5' -61.1 NC_005345.2 + 40694 0.66 0.463656
Target:  5'- uCCCaCGuGugGCCGGUGCCGUccGUccacaccgaccGCUCGg -3'
miRNA:   3'- -GGG-GC-CugCGGCUGCGGCG--CA-----------UGAGC- -5'
26392 5' -61.1 NC_005345.2 + 3274 0.66 0.463656
Target:  5'- aCCCCGuGCGCa---GCUGCGUGC-CGu -3'
miRNA:   3'- -GGGGCcUGCGgcugCGGCGCAUGaGC- -5'
26392 5' -61.1 NC_005345.2 + 16348 0.66 0.463656
Target:  5'- cCUCgCGGaacGCGCCGAgcauCGCCGCGgcgucgccGCUCu -3'
miRNA:   3'- -GGG-GCC---UGCGGCU----GCGGCGCa-------UGAGc -5'
26392 5' -61.1 NC_005345.2 + 14792 0.66 0.457986
Target:  5'- gCCCCGGuGCGCuuCGACGUCgagcggcgggcgcggGUGUGgUCGa -3'
miRNA:   3'- -GGGGCC-UGCG--GCUGCGG---------------CGCAUgAGC- -5'
26392 5' -61.1 NC_005345.2 + 31373 0.66 0.454228
Target:  5'- aCgCGGuCGCCGucauCGCCGgGUACcugCGu -3'
miRNA:   3'- gGgGCCuGCGGCu---GCGGCgCAUGa--GC- -5'
26392 5' -61.1 NC_005345.2 + 44868 0.66 0.454228
Target:  5'- gCCCCGcGGCgGCCG-CGUCGCGagGCg-- -3'
miRNA:   3'- -GGGGC-CUG-CGGCuGCGGCGCa-UGagc -5'
26392 5' -61.1 NC_005345.2 + 4603 0.66 0.454228
Target:  5'- aCUCGGAC-CCGcuCGCgGCGUACcuggUCGa -3'
miRNA:   3'- gGGGCCUGcGGCu-GCGgCGCAUG----AGC- -5'
26392 5' -61.1 NC_005345.2 + 21109 0.66 0.45329
Target:  5'- aCCCGccgaaagcucgacGACGUCGAgGCCuGCGcGCUCc -3'
miRNA:   3'- gGGGC-------------CUGCGGCUgCGG-CGCaUGAGc -5'
26392 5' -61.1 NC_005345.2 + 17474 0.66 0.443978
Target:  5'- aCCCCaaguuCGCCGAucuuguaCGCCGCGgucacgaACUCGc -3'
miRNA:   3'- -GGGGccu--GCGGCU-------GCGGCGCa------UGAGC- -5'
26392 5' -61.1 NC_005345.2 + 35934 0.66 0.443978
Target:  5'- gCCgGGGCGCgGGgugugcuCGCCGCGcgggcugccGCUCGg -3'
miRNA:   3'- gGGgCCUGCGgCU-------GCGGCGCa--------UGAGC- -5'
26392 5' -61.1 NC_005345.2 + 18471 0.66 0.443978
Target:  5'- gUCCCGcGAC-CCGAagaugcuCGCCGCGU--UCGg -3'
miRNA:   3'- -GGGGC-CUGcGGCU-------GCGGCGCAugAGC- -5'
26392 5' -61.1 NC_005345.2 + 23786 0.66 0.441205
Target:  5'- gCCCGGAgcaugagggagagcUGCCGACGCuCGggcacuaCGUuCUCGa -3'
miRNA:   3'- gGGGCCU--------------GCGGCUGCG-GC-------GCAuGAGC- -5'
26392 5' -61.1 NC_005345.2 + 29945 0.66 0.43569
Target:  5'- -aCCGGcucgACGUCGGgGCCGuCGgGCUCGu -3'
miRNA:   3'- ggGGCC----UGCGGCUgCGGC-GCaUGAGC- -5'
26392 5' -61.1 NC_005345.2 + 21794 0.66 0.43569
Target:  5'- -gCCGGACaGCCGACGgCGgaaGUAC-CGc -3'
miRNA:   3'- ggGGCCUG-CGGCUGCgGCg--CAUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.