miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26393 3' -59.5 NC_005345.2 + 40359 0.66 0.541801
Target:  5'- uGG-CGAGugGUCaGGUGCG-CGcACCGg -3'
miRNA:   3'- -CCaGCUCugCGGcCCGUGCuGC-UGGC- -5'
26393 3' -59.5 NC_005345.2 + 34782 0.66 0.541801
Target:  5'- cGGUCgccGAGcuGCGCCGGGuCGCGguccucGCGcacGCCGu -3'
miRNA:   3'- -CCAG---CUC--UGCGGCCC-GUGC------UGC---UGGC- -5'
26393 3' -59.5 NC_005345.2 + 23326 0.66 0.541801
Target:  5'- cGUCGGGugcGCGCCGacgaGCAUGuaccCGGCCGa -3'
miRNA:   3'- cCAGCUC---UGCGGCc---CGUGCu---GCUGGC- -5'
26393 3' -59.5 NC_005345.2 + 19110 0.66 0.541801
Target:  5'- cGUCGgcccacgcguGGGCGCCGauccGCuCGGCGACCu -3'
miRNA:   3'- cCAGC----------UCUGCGGCc---CGuGCUGCUGGc -5'
26393 3' -59.5 NC_005345.2 + 10378 0.66 0.541801
Target:  5'- -uUCGAGGgCGUCGGuGCcccACGGCGugaGCCGg -3'
miRNA:   3'- ccAGCUCU-GCGGCC-CG---UGCUGC---UGGC- -5'
26393 3' -59.5 NC_005345.2 + 33721 0.66 0.541801
Target:  5'- cGGgCGAGguguACGCCaaGGGCuACGGCGAgUCGa -3'
miRNA:   3'- -CCaGCUC----UGCGG--CCCG-UGCUGCU-GGC- -5'
26393 3' -59.5 NC_005345.2 + 31813 0.66 0.538725
Target:  5'- gGGUCGGGguccgggauGCGUgcgugcacccgcggCGGGUGCGGCGcACCu -3'
miRNA:   3'- -CCAGCUC---------UGCG--------------GCCCGUGCUGC-UGGc -5'
26393 3' -59.5 NC_005345.2 + 13555 0.66 0.537701
Target:  5'- cGUCGAccacauccaCGGGCACGGCGGCgCGa -3'
miRNA:   3'- cCAGCUcugcg----GCCCGUGCUGCUG-GC- -5'
26393 3' -59.5 NC_005345.2 + 48368 0.66 0.535655
Target:  5'- cGGUgGGGcgaggcgacggcgcuGCGCUGGGagaACGuCGACCu -3'
miRNA:   3'- -CCAgCUC---------------UGCGGCCCg--UGCuGCUGGc -5'
26393 3' -59.5 NC_005345.2 + 11844 0.66 0.531572
Target:  5'- aGGUCGAcgccacGGCGUgGGcaucggcccuGCACGACGugCc -3'
miRNA:   3'- -CCAGCU------CUGCGgCC----------CGUGCUGCugGc -5'
26393 3' -59.5 NC_005345.2 + 27156 0.66 0.531572
Target:  5'- --cCGAGGCGCU--GCGCGGCGucccGCCGg -3'
miRNA:   3'- ccaGCUCUGCGGccCGUGCUGC----UGGC- -5'
26393 3' -59.5 NC_005345.2 + 6873 0.66 0.531572
Target:  5'- aGUCGccGAUGCCGcugcGCAUGugGAUCGa -3'
miRNA:   3'- cCAGCu-CUGCGGCc---CGUGCugCUGGC- -5'
26393 3' -59.5 NC_005345.2 + 15805 0.66 0.531572
Target:  5'- uGGgCGGcACGCCGGcUACGccGCGACCGc -3'
miRNA:   3'- -CCaGCUcUGCGGCCcGUGC--UGCUGGC- -5'
26393 3' -59.5 NC_005345.2 + 39520 0.66 0.531572
Target:  5'- cGUCG-GuC-UCGGGCACGGCGAgCGc -3'
miRNA:   3'- cCAGCuCuGcGGCCCGUGCUGCUgGC- -5'
26393 3' -59.5 NC_005345.2 + 8729 0.66 0.531572
Target:  5'- -aUCGccGCGUCGGuggcgaGCGCGACGACUGc -3'
miRNA:   3'- ccAGCucUGCGGCC------CGUGCUGCUGGC- -5'
26393 3' -59.5 NC_005345.2 + 14449 0.66 0.531572
Target:  5'- cGGUCacuGCGCCGGuuGCGAUcGCCGa -3'
miRNA:   3'- -CCAGcucUGCGGCCcgUGCUGcUGGC- -5'
26393 3' -59.5 NC_005345.2 + 46014 0.66 0.528517
Target:  5'- cGUCGGcacggcugugcaguGGCGCCucGGCGCGAaguaUGGCCGg -3'
miRNA:   3'- cCAGCU--------------CUGCGGc-CCGUGCU----GCUGGC- -5'
26393 3' -59.5 NC_005345.2 + 30568 0.66 0.525468
Target:  5'- -uUCGAcccggcgguguucccGACGCUGGGCGCGcacccgGCGAgCGc -3'
miRNA:   3'- ccAGCU---------------CUGCGGCCCGUGC------UGCUgGC- -5'
26393 3' -59.5 NC_005345.2 + 28688 0.66 0.521414
Target:  5'- aGG-CGAGGCGUuggcuacuCGGGCGCG--GACCu -3'
miRNA:   3'- -CCaGCUCUGCG--------GCCCGUGCugCUGGc -5'
26393 3' -59.5 NC_005345.2 + 24408 0.66 0.521414
Target:  5'- -aUCGAGACGCCGaaCGCGuucACG-CCGg -3'
miRNA:   3'- ccAGCUCUGCGGCccGUGC---UGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.