miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26393 5' -54.9 NC_005345.2 + 23569 0.66 0.744863
Target:  5'- cGGCAGCACCGgcaGCUG-CgGG-CGGCc -3'
miRNA:   3'- -CCGUUGUGGCac-UGGCuGaCCaGCUG- -5'
26393 5' -54.9 NC_005345.2 + 331 0.66 0.744863
Target:  5'- gGGCGGCuCCGcucUGACCGAaucagagcGGUgGGCg -3'
miRNA:   3'- -CCGUUGuGGC---ACUGGCUga------CCAgCUG- -5'
26393 5' -54.9 NC_005345.2 + 9165 0.66 0.744863
Target:  5'- cGGguGCACgggccgguCGUGugCGAgCUGaUCGACg -3'
miRNA:   3'- -CCguUGUG--------GCACugGCU-GACcAGCUG- -5'
26393 5' -54.9 NC_005345.2 + 26783 0.66 0.744863
Target:  5'- cGGCGG-AUCGUGGCCGGCgccGcGUCG-Ca -3'
miRNA:   3'- -CCGUUgUGGCACUGGCUGa--C-CAGCuG- -5'
26393 5' -54.9 NC_005345.2 + 22288 0.66 0.744863
Target:  5'- aGGCG--GCCG-GGgCGACgugGGUCGAg -3'
miRNA:   3'- -CCGUugUGGCaCUgGCUGa--CCAGCUg -5'
26393 5' -54.9 NC_005345.2 + 39872 0.66 0.734361
Target:  5'- aGGU-ACGCCGcGGCCGACaUGcgggacuuGUCGGCc -3'
miRNA:   3'- -CCGuUGUGGCaCUGGCUG-AC--------CAGCUG- -5'
26393 5' -54.9 NC_005345.2 + 19580 0.66 0.723757
Target:  5'- aGGacccCGCCGUGACCGAUcacgaccaGGaCGACg -3'
miRNA:   3'- -CCguu-GUGGCACUGGCUGa-------CCaGCUG- -5'
26393 5' -54.9 NC_005345.2 + 3913 0.66 0.723757
Target:  5'- gGGguGCGCCGUGGCUGACgac-CGcACc -3'
miRNA:   3'- -CCguUGUGGCACUGGCUGaccaGC-UG- -5'
26393 5' -54.9 NC_005345.2 + 9887 0.66 0.723757
Target:  5'- aGCAGCAgCG-GGCCGAaCUcGG-CGGCg -3'
miRNA:   3'- cCGUUGUgGCaCUGGCU-GA-CCaGCUG- -5'
26393 5' -54.9 NC_005345.2 + 7297 0.66 0.721624
Target:  5'- aGGCGAaccgcaggacgaGCCGcgGugCGACgGcGUCGACa -3'
miRNA:   3'- -CCGUUg-----------UGGCa-CugGCUGaC-CAGCUG- -5'
26393 5' -54.9 NC_005345.2 + 44639 0.66 0.71306
Target:  5'- aGGCAG-ACCG-GAgCGAUcccGGUCGGCu -3'
miRNA:   3'- -CCGUUgUGGCaCUgGCUGa--CCAGCUG- -5'
26393 5' -54.9 NC_005345.2 + 41814 0.66 0.71306
Target:  5'- gGGCcACACCGcGugCGACUcGGcguccgcCGACu -3'
miRNA:   3'- -CCGuUGUGGCaCugGCUGA-CCa------GCUG- -5'
26393 5' -54.9 NC_005345.2 + 48398 0.66 0.71306
Target:  5'- gGGCuaucccacgAGCACCGcGAgCGGCacGUCGACg -3'
miRNA:   3'- -CCG---------UUGUGGCaCUgGCUGacCAGCUG- -5'
26393 5' -54.9 NC_005345.2 + 43792 0.66 0.71306
Target:  5'- aGGCAGCGCCucgcgaGUGuccuucUCGGCguccgGGUCGAUc -3'
miRNA:   3'- -CCGUUGUGG------CACu-----GGCUGa----CCAGCUG- -5'
26393 5' -54.9 NC_005345.2 + 47873 0.66 0.71306
Target:  5'- cGGCGACGgugaCGUcGGCCGGCgugcugUGGUCGuGCc -3'
miRNA:   3'- -CCGUUGUg---GCA-CUGGCUG------ACCAGC-UG- -5'
26393 5' -54.9 NC_005345.2 + 40232 0.66 0.71306
Target:  5'- gGGCGGcCGCCGUGAUC--CUGG-CGAg -3'
miRNA:   3'- -CCGUU-GUGGCACUGGcuGACCaGCUg -5'
26393 5' -54.9 NC_005345.2 + 43943 0.66 0.702284
Target:  5'- uGUAGCGCCG-GGCCGGCcGuGcCGAUg -3'
miRNA:   3'- cCGUUGUGGCaCUGGCUGaC-CaGCUG- -5'
26393 5' -54.9 NC_005345.2 + 3839 0.66 0.702284
Target:  5'- aGGuCGGCGgCGUGcggacCCGGCUGaUCGGCg -3'
miRNA:   3'- -CC-GUUGUgGCACu----GGCUGACcAGCUG- -5'
26393 5' -54.9 NC_005345.2 + 26905 0.66 0.702284
Target:  5'- cGGCAGCACCuc-GCCGucgacgucgagcGCaUGGUCGAg -3'
miRNA:   3'- -CCGUUGUGGcacUGGC------------UG-ACCAGCUg -5'
26393 5' -54.9 NC_005345.2 + 34852 0.66 0.702284
Target:  5'- cGCGGCGCuCGUGACCcuGCUcGUCGuCg -3'
miRNA:   3'- cCGUUGUG-GCACUGGc-UGAcCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.