miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26394 3' -55 NC_005345.2 + 43713 0.66 0.69822
Target:  5'- -gGCCGAcCCGGGCgcCGCCgaagaACUcgGCGAg -3'
miRNA:   3'- caCGGCU-GGCUCGaaGUGG-----UGA--UGCU- -5'
26394 3' -55 NC_005345.2 + 25081 0.66 0.709131
Target:  5'- -gGCCGGCCGAucgGC-UCGCCG-UACGc -3'
miRNA:   3'- caCGGCUGGCU---CGaAGUGGUgAUGCu -5'
26394 3' -55 NC_005345.2 + 38275 0.66 0.709131
Target:  5'- gGUGCgGGCaCGGGacgCGCCGCgUGCGGc -3'
miRNA:   3'- -CACGgCUG-GCUCgaaGUGGUG-AUGCU- -5'
26394 3' -55 NC_005345.2 + 19392 0.66 0.709131
Target:  5'- cGUGCCGagcagcgucgcGCCGAGCUcgguCgGCUGCGc -3'
miRNA:   3'- -CACGGC-----------UGGCUCGAagu-GgUGAUGCu -5'
26394 3' -55 NC_005345.2 + 13261 0.66 0.709131
Target:  5'- aUGCCG-CCGucGGCga-ACCGCUGCa- -3'
miRNA:   3'- cACGGCuGGC--UCGaagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 32818 0.66 0.665139
Target:  5'- -cGCCGA-CGAGCuUUCGCUGC-GCGGg -3'
miRNA:   3'- caCGGCUgGCUCG-AAGUGGUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 14927 0.66 0.665139
Target:  5'- cGUGCCGccCCGGGCga-ACUGCUGCc- -3'
miRNA:   3'- -CACGGCu-GGCUCGaagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 7259 0.66 0.665139
Target:  5'- -gGCCGaACCGAcaaGCgUCGCCGCccgcGCGAu -3'
miRNA:   3'- caCGGC-UGGCU---CGaAGUGGUGa---UGCU- -5'
26394 3' -55 NC_005345.2 + 5666 0.66 0.665139
Target:  5'- -cGgCGAUCGAGg-UCACCugUGCGu -3'
miRNA:   3'- caCgGCUGGCUCgaAGUGGugAUGCu -5'
26394 3' -55 NC_005345.2 + 8387 0.67 0.631772
Target:  5'- -gGCCGACCG-GCccgacgaGCCGCUGCc- -3'
miRNA:   3'- caCGGCUGGCuCGaag----UGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 16086 0.67 0.642908
Target:  5'- cUGCCGcacguacacGCCGAGCUcgCGCCAUgugagcaGCGGc -3'
miRNA:   3'- cACGGC---------UGGCUCGAa-GUGGUGa------UGCU- -5'
26394 3' -55 NC_005345.2 + 13223 0.67 0.642908
Target:  5'- -cGCCGACCuu-CUUCGCCGCgucccCGAg -3'
miRNA:   3'- caCGGCUGGcucGAAGUGGUGau---GCU- -5'
26394 3' -55 NC_005345.2 + 2481 0.67 0.631772
Target:  5'- -cGCgCGAgCGAGCUcgauguacaCGCCGCUGCGc -3'
miRNA:   3'- caCG-GCUgGCUCGAa--------GUGGUGAUGCu -5'
26394 3' -55 NC_005345.2 + 4781 0.67 0.654034
Target:  5'- cGUGCCuuuCCGGGC-UCGCCGCgggugGgGAa -3'
miRNA:   3'- -CACGGcu-GGCUCGaAGUGGUGa----UgCU- -5'
26394 3' -55 NC_005345.2 + 6200 0.67 0.628431
Target:  5'- cGUGCCGcCCGgcccguccgcgaGGCUcuugcuccggcuggUCGCCGgUACGAa -3'
miRNA:   3'- -CACGGCuGGC------------UCGA--------------AGUGGUgAUGCU- -5'
26394 3' -55 NC_005345.2 + 48389 0.67 0.620637
Target:  5'- -cGCCGGCCgGGGCUaucccacgagCACCGCgaGCGGc -3'
miRNA:   3'- caCGGCUGG-CUCGAa---------GUGGUGa-UGCU- -5'
26394 3' -55 NC_005345.2 + 25377 0.67 0.654034
Target:  5'- aGUGCCGGCuCGAcGCgaUCGCCGCcgGCc- -3'
miRNA:   3'- -CACGGCUG-GCU-CGa-AGUGGUGa-UGcu -5'
26394 3' -55 NC_005345.2 + 9316 0.67 0.620637
Target:  5'- -gGCCGGCCGAGCc-CGCgAUgcCGAg -3'
miRNA:   3'- caCGGCUGGCUCGaaGUGgUGauGCU- -5'
26394 3' -55 NC_005345.2 + 22034 0.67 0.619523
Target:  5'- gGUGCCGccguggcGCCGAGCaugUCgGCCAUgACGGc -3'
miRNA:   3'- -CACGGC-------UGGCUCGa--AG-UGGUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 46481 0.67 0.609511
Target:  5'- -cGCCGcAUCGAccGuCUUCgugGCCGCUGCGAg -3'
miRNA:   3'- caCGGC-UGGCU--C-GAAG---UGGUGAUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.