Results 21 - 40 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26394 | 3' | -55 | NC_005345.2 | + | 11420 | 0.66 | 0.676213 |
Target: 5'- -cGCCGACCagccGGCgccgCGCCGCagcGCGAu -3' miRNA: 3'- caCGGCUGGc---UCGaa--GUGGUGa--UGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 42735 | 0.66 | 0.665139 |
Target: 5'- -cGCCGACCGAcgGCgggC-CCGCgaaaGCGAu -3' miRNA: 3'- caCGGCUGGCU--CGaa-GuGGUGa---UGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 5147 | 0.66 | 0.665139 |
Target: 5'- -cGCCGACaccgugcaCGAGCgacucgUCGCCGCccuCGAa -3' miRNA: 3'- caCGGCUG--------GCUCGa-----AGUGGUGau-GCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 5666 | 0.66 | 0.665139 |
Target: 5'- -cGgCGAUCGAGg-UCACCugUGCGu -3' miRNA: 3'- caCgGCUGGCUCgaAGUGGugAUGCu -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 32818 | 0.66 | 0.665139 |
Target: 5'- -cGCCGA-CGAGCuUUCGCUGC-GCGGg -3' miRNA: 3'- caCGGCUgGCUCG-AAGUGGUGaUGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 14927 | 0.66 | 0.665139 |
Target: 5'- cGUGCCGccCCGGGCga-ACUGCUGCc- -3' miRNA: 3'- -CACGGCu-GGCUCGaagUGGUGAUGcu -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 7259 | 0.66 | 0.665139 |
Target: 5'- -gGCCGaACCGAcaaGCgUCGCCGCccgcGCGAu -3' miRNA: 3'- caCGGC-UGGCU---CGaAGUGGUGa---UGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 39184 | 0.66 | 0.665139 |
Target: 5'- -cGCCuacAUCGAGC-UCACCGCgcGCGAg -3' miRNA: 3'- caCGGc--UGGCUCGaAGUGGUGa-UGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 10821 | 0.66 | 0.66403 |
Target: 5'- gGUGCCugcggcaGACaCGAGCcggCGCCgaGCUGCGGu -3' miRNA: 3'- -CACGG-------CUG-GCUCGaa-GUGG--UGAUGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 18920 | 0.67 | 0.654034 |
Target: 5'- -cGUCGACCG-GC-UCACCGCcggaugcGCGAu -3' miRNA: 3'- caCGGCUGGCuCGaAGUGGUGa------UGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 25377 | 0.67 | 0.654034 |
Target: 5'- aGUGCCGGCuCGAcGCgaUCGCCGCcgGCc- -3' miRNA: 3'- -CACGGCUG-GCU-CGa-AGUGGUGa-UGcu -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 792 | 0.67 | 0.654034 |
Target: 5'- aUGCCGACCGGGCc-CGCUuacacCUGCu- -3' miRNA: 3'- cACGGCUGGCUCGaaGUGGu----GAUGcu -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 32189 | 0.67 | 0.654034 |
Target: 5'- -aGCCGGCCGAGgU--GCCGCagGCGu -3' miRNA: 3'- caCGGCUGGCUCgAagUGGUGa-UGCu -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 4781 | 0.67 | 0.654034 |
Target: 5'- cGUGCCuuuCCGGGC-UCGCCGCgggugGgGAa -3' miRNA: 3'- -CACGGcu-GGCUCGaAGUGGUGa----UgCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 1334 | 0.67 | 0.642908 |
Target: 5'- uUGCCGGCCGGGUcgcgguaacgCGCCuGCcACGAg -3' miRNA: 3'- cACGGCUGGCUCGaa--------GUGG-UGaUGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 13223 | 0.67 | 0.642908 |
Target: 5'- -cGCCGACCuu-CUUCGCCGCgucccCGAg -3' miRNA: 3'- caCGGCUGGcucGAAGUGGUGau---GCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 16086 | 0.67 | 0.642908 |
Target: 5'- cUGCCGcacguacacGCCGAGCUcgCGCCAUgugagcaGCGGc -3' miRNA: 3'- cACGGC---------UGGCUCGAa-GUGGUGa------UGCU- -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 8387 | 0.67 | 0.631772 |
Target: 5'- -gGCCGACCG-GCccgacgaGCCGCUGCc- -3' miRNA: 3'- caCGGCUGGCuCGaag----UGGUGAUGcu -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 2481 | 0.67 | 0.631772 |
Target: 5'- -cGCgCGAgCGAGCUcgauguacaCGCCGCUGCGc -3' miRNA: 3'- caCG-GCUgGCUCGAa--------GUGGUGAUGCu -5' |
|||||||
26394 | 3' | -55 | NC_005345.2 | + | 6200 | 0.67 | 0.628431 |
Target: 5'- cGUGCCGcCCGgcccguccgcgaGGCUcuugcuccggcuggUCGCCGgUACGAa -3' miRNA: 3'- -CACGGCuGGC------------UCGA--------------AGUGGUgAUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home