miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26395 3' -59 NC_005345.2 + 18017 0.66 0.496405
Target:  5'- -gCCUgUCgGACGCCG-GGCGaGCGCa -3'
miRNA:   3'- aaGGAaGGgCUGCGGCuCUGUcCGCG- -5'
26395 3' -59 NC_005345.2 + 40240 0.66 0.496405
Target:  5'- -gCCgugaUCCUGGCgaGCgGGGACGgGGCGCc -3'
miRNA:   3'- aaGGa---AGGGCUG--CGgCUCUGU-CCGCG- -5'
26395 3' -59 NC_005345.2 + 9321 0.66 0.496405
Target:  5'- -gCCgagCCCgcGAUGCCGAGGguGGUcgGCa -3'
miRNA:   3'- aaGGaa-GGG--CUGCGGCUCUguCCG--CG- -5'
26395 3' -59 NC_005345.2 + 38078 0.66 0.486257
Target:  5'- -gCCg-CCgGGCGCCac-GCAGGCGCa -3'
miRNA:   3'- aaGGaaGGgCUGCGGcucUGUCCGCG- -5'
26395 3' -59 NC_005345.2 + 41798 0.66 0.486257
Target:  5'- -aCCgacgCCCcgGACGUCGAGACccuuGCGCa -3'
miRNA:   3'- aaGGaa--GGG--CUGCGGCUCUGuc--CGCG- -5'
26395 3' -59 NC_005345.2 + 6572 0.66 0.486257
Target:  5'- aUCCUgccgCCCGGCGaccccCUGucGCAGGCGa -3'
miRNA:   3'- aAGGAa---GGGCUGC-----GGCucUGUCCGCg -5'
26395 3' -59 NC_005345.2 + 34998 0.66 0.486257
Target:  5'- -----aCUCGGCGCCGGGGCGcugcGGCGg -3'
miRNA:   3'- aaggaaGGGCUGCGGCUCUGU----CCGCg -5'
26395 3' -59 NC_005345.2 + 8437 0.66 0.486257
Target:  5'- gUCgCUg-UCGACGaCGAGcACGGGCGCg -3'
miRNA:   3'- aAG-GAagGGCUGCgGCUC-UGUCCGCG- -5'
26395 3' -59 NC_005345.2 + 35918 0.66 0.486257
Target:  5'- gUCgUcaUCCaguGACGCCGGGGCgcgGGGUGUg -3'
miRNA:   3'- aAGgA--AGGg--CUGCGGCUCUG---UCCGCG- -5'
26395 3' -59 NC_005345.2 + 39163 0.66 0.486257
Target:  5'- cUUCgCUUUCaCGugGUCGAGGCGGaccCGCa -3'
miRNA:   3'- -AAG-GAAGG-GCugCGGCUCUGUCc--GCG- -5'
26395 3' -59 NC_005345.2 + 43017 0.66 0.486257
Target:  5'- gUUCUUCCCGuacuGCGUCGucGGCGGcCGCa -3'
miRNA:   3'- aAGGAAGGGC----UGCGGCu-CUGUCcGCG- -5'
26395 3' -59 NC_005345.2 + 22234 0.66 0.476208
Target:  5'- -aCCaugcgCUCGACGUCGAcGGCgAGGUGCu -3'
miRNA:   3'- aaGGaa---GGGCUGCGGCU-CUG-UCCGCG- -5'
26395 3' -59 NC_005345.2 + 45448 0.66 0.476208
Target:  5'- -aCCUcgcCgCCGGCgGCCGAGAC-GGCGg -3'
miRNA:   3'- aaGGAa--G-GGCUG-CGGCUCUGuCCGCg -5'
26395 3' -59 NC_005345.2 + 27136 0.66 0.476208
Target:  5'- -aCCgg-CCGGCGUCGAGcuGCccgAGGCGCu -3'
miRNA:   3'- aaGGaagGGCUGCGGCUC--UG---UCCGCG- -5'
26395 3' -59 NC_005345.2 + 35311 0.66 0.466264
Target:  5'- -gCCgUCCUcGCGCCGAGcuucCGGGCGa -3'
miRNA:   3'- aaGGaAGGGcUGCGGCUCu---GUCCGCg -5'
26395 3' -59 NC_005345.2 + 41302 0.66 0.466264
Target:  5'- -gCCUcggUgCCGGCGCCGGcGGCuGGaCGCc -3'
miRNA:   3'- aaGGA---AgGGCUGCGGCU-CUGuCC-GCG- -5'
26395 3' -59 NC_005345.2 + 46331 0.66 0.466264
Target:  5'- -gCC-UCgCGGCGCUGGaGCAGGCGa -3'
miRNA:   3'- aaGGaAGgGCUGCGGCUcUGUCCGCg -5'
26395 3' -59 NC_005345.2 + 29945 0.66 0.466264
Target:  5'- -aCCggCUCGACGUCGGGGCcgucGGGCu- -3'
miRNA:   3'- aaGGaaGGGCUGCGGCUCUG----UCCGcg -5'
26395 3' -59 NC_005345.2 + 28534 0.66 0.456428
Target:  5'- -aUCgcCCCGuCGCCGAGACuugcGaGCGCc -3'
miRNA:   3'- aaGGaaGGGCuGCGGCUCUGu---C-CGCG- -5'
26395 3' -59 NC_005345.2 + 27961 0.66 0.456428
Target:  5'- -aCaagCCCGACcacaagGCCGAGGCcgcgaaguacaAGGCGCu -3'
miRNA:   3'- aaGgaaGGGCUG------CGGCUCUG-----------UCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.