miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26395 5' -52.9 NC_005345.2 + 28794 0.66 0.834274
Target:  5'- gGGGCGaugcUCACGCaCGGCAagguccgCACCGc- -3'
miRNA:   3'- -CCCGCa---AGUGCGaGCUGUa------GUGGUac -5'
26395 5' -52.9 NC_005345.2 + 41585 0.66 0.825082
Target:  5'- cGGGCGUgcuCGgUCGugAU-GCCGUGc -3'
miRNA:   3'- -CCCGCAaguGCgAGCugUAgUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 10733 0.66 0.825082
Target:  5'- cGGaUGgcCGCGCUCGAuguCGUCGCCGa- -3'
miRNA:   3'- cCC-GCaaGUGCGAGCU---GUAGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 29486 0.66 0.825082
Target:  5'- cGGGCGUcauccUCAUGCcgaaggCGGCcguGUCGCaCAUGc -3'
miRNA:   3'- -CCCGCA-----AGUGCGa-----GCUG---UAGUG-GUAC- -5'
26395 5' -52.9 NC_005345.2 + 6729 0.66 0.825082
Target:  5'- cGGUGUgcaagccCACGUcCcGCAUCGCCGUGa -3'
miRNA:   3'- cCCGCAa------GUGCGaGcUGUAGUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 12547 0.66 0.825082
Target:  5'- cGGGCGca-GCGCU-GGCAgguggCAUCGUGa -3'
miRNA:   3'- -CCCGCaagUGCGAgCUGUa----GUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 931 0.66 0.825082
Target:  5'- cGGCG-UCACGUcgUCGAgGUCGCgCAc- -3'
miRNA:   3'- cCCGCaAGUGCG--AGCUgUAGUG-GUac -5'
26395 5' -52.9 NC_005345.2 + 3467 0.66 0.825082
Target:  5'- cGGGCuGUcggaCAUGcCUCGACGUUACCc-- -3'
miRNA:   3'- -CCCG-CAa---GUGC-GAGCUGUAGUGGuac -5'
26395 5' -52.9 NC_005345.2 + 39365 0.66 0.819465
Target:  5'- cGGCGaaCACGCugucgcagcuacgccUCGGCGgcgcaaUCGCCGUGc -3'
miRNA:   3'- cCCGCaaGUGCG---------------AGCUGU------AGUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 32429 0.66 0.815679
Target:  5'- cGGCGgccgacggCACGCucuaccUCGACAUCACgGa- -3'
miRNA:   3'- cCCGCaa------GUGCG------AGCUGUAGUGgUac -5'
26395 5' -52.9 NC_005345.2 + 19560 0.66 0.815679
Target:  5'- -cGUGUUCAgcUGCUCGACcgaCACCAUc -3'
miRNA:   3'- ccCGCAAGU--GCGAGCUGua-GUGGUAc -5'
26395 5' -52.9 NC_005345.2 + 2805 0.66 0.815679
Target:  5'- cGGCGU--GCGCUCGA--UCGCCu-- -3'
miRNA:   3'- cCCGCAagUGCGAGCUguAGUGGuac -5'
26395 5' -52.9 NC_005345.2 + 5578 0.66 0.815679
Target:  5'- cGGCGUgaacaaaagcuUCGCGCUCGu----GCCGUGg -3'
miRNA:   3'- cCCGCA-----------AGUGCGAGCuguagUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 41360 0.66 0.806077
Target:  5'- cGGCGgcgcaGCGCUCGGCAaCGgacUCAUGg -3'
miRNA:   3'- cCCGCaag--UGCGAGCUGUaGU---GGUAC- -5'
26395 5' -52.9 NC_005345.2 + 9363 0.66 0.806077
Target:  5'- cGGGCGgcCGgGCUCGAC--CACUAc- -3'
miRNA:   3'- -CCCGCaaGUgCGAGCUGuaGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 10859 0.66 0.806077
Target:  5'- uGGGCGgacugccgCACGCggCG-CGUC-CCGUGc -3'
miRNA:   3'- -CCCGCaa------GUGCGa-GCuGUAGuGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 36035 0.66 0.803158
Target:  5'- cGGGCGUUCGaggugaaaGCgCGGCAccgagucacgguucUCACCGg- -3'
miRNA:   3'- -CCCGCAAGUg-------CGaGCUGU--------------AGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 5765 0.66 0.796284
Target:  5'- cGGGCGcaggCGCagguGCUCGGCGU-GCCGUa -3'
miRNA:   3'- -CCCGCaa--GUG----CGAGCUGUAgUGGUAc -5'
26395 5' -52.9 NC_005345.2 + 39788 0.66 0.796284
Target:  5'- cGGGUGUggACGCUgccccUGA--UCACCGUGg -3'
miRNA:   3'- -CCCGCAagUGCGA-----GCUguAGUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 28585 0.66 0.796284
Target:  5'- cGGaGuCGgUCACGCUUGACAccucgacguUCACCGc- -3'
miRNA:   3'- -CC-C-GCaAGUGCGAGCUGU---------AGUGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.