miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26395 5' -52.9 NC_005345.2 + 31702 1.11 0.001156
Target:  5'- uGGGCGUUCACGCUCGACAUCACCAUGa -3'
miRNA:   3'- -CCCGCAAGUGCGAGCUGUAGUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 41693 0.68 0.70156
Target:  5'- cGGCGacUACGCgagcuUCGGCAUCACCu-- -3'
miRNA:   3'- cCCGCaaGUGCG-----AGCUGUAGUGGuac -5'
26395 5' -52.9 NC_005345.2 + 7595 0.68 0.734202
Target:  5'- cGGCGagCGCGCgcaCGACGUCgucgACCAg- -3'
miRNA:   3'- cCCGCaaGUGCGa--GCUGUAG----UGGUac -5'
26395 5' -52.9 NC_005345.2 + 28794 0.66 0.834274
Target:  5'- gGGGCGaugcUCACGCaCGGCAagguccgCACCGc- -3'
miRNA:   3'- -CCCGCa---AGUGCGaGCUGUa------GUGGUac -5'
26395 5' -52.9 NC_005345.2 + 25689 0.74 0.366028
Target:  5'- cGGCuGcUCGCGCUCGGCGUgACCGg- -3'
miRNA:   3'- cCCG-CaAGUGCGAGCUGUAgUGGUac -5'
26395 5' -52.9 NC_005345.2 + 18507 0.73 0.411873
Target:  5'- aGGCGcu-GCGCUCGGCGUCcucggcGCCAUGu -3'
miRNA:   3'- cCCGCaagUGCGAGCUGUAG------UGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 34191 0.71 0.524007
Target:  5'- aGGCGcUCGgGCUgaaCGcCGUCACCAUGg -3'
miRNA:   3'- cCCGCaAGUgCGA---GCuGUAGUGGUAC- -5'
26395 5' -52.9 NC_005345.2 + 25459 0.71 0.534823
Target:  5'- gGGGCGa-CAUGCUCGACGagaCGCCGg- -3'
miRNA:   3'- -CCCGCaaGUGCGAGCUGUa--GUGGUac -5'
26395 5' -52.9 NC_005345.2 + 45070 0.69 0.634694
Target:  5'- uGGGCcgaCugGCUCGGCG-CACCGa- -3'
miRNA:   3'- -CCCGcaaGugCGAGCUGUaGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 25023 0.68 0.690524
Target:  5'- aGGCGUUCGCGaCguaCGACGUCGugggCAUGu -3'
miRNA:   3'- cCCGCAAGUGC-Ga--GCUGUAGUg---GUAC- -5'
26395 5' -52.9 NC_005345.2 + 8956 0.69 0.657109
Target:  5'- cGGGUGcUCGgGCUCGACcuGUCGCUc-- -3'
miRNA:   3'- -CCCGCaAGUgCGAGCUG--UAGUGGuac -5'
26395 5' -52.9 NC_005345.2 + 40445 0.69 0.623477
Target:  5'- cGGCccgcgCACGUUCGACAUCGgcgacaacCCGUGg -3'
miRNA:   3'- cCCGcaa--GUGCGAGCUGUAGU--------GGUAC- -5'
26395 5' -52.9 NC_005345.2 + 24908 0.76 0.29275
Target:  5'- cGGGCaccuGUUCACGCUCGGCGUgugggagcagcCGCCGc- -3'
miRNA:   3'- -CCCG----CAAGUGCGAGCUGUA-----------GUGGUac -5'
26395 5' -52.9 NC_005345.2 + 34099 0.69 0.668286
Target:  5'- cGGCGccCGCGacggCGACAUCGCCGc- -3'
miRNA:   3'- cCCGCaaGUGCga--GCUGUAGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 34637 0.75 0.331968
Target:  5'- gGGGCGUggcugCugcCGCUCGGCGUCGCgGUc -3'
miRNA:   3'- -CCCGCAa----Gu--GCGAGCUGUAGUGgUAc -5'
26395 5' -52.9 NC_005345.2 + 23512 0.7 0.612268
Target:  5'- uGGCaGUUCcUGCUCGACAcCGCCcUGa -3'
miRNA:   3'- cCCG-CAAGuGCGAGCUGUaGUGGuAC- -5'
26395 5' -52.9 NC_005345.2 + 14429 0.68 0.690524
Target:  5'- cGGGCGaucgaggUCGCGCUCuGCucgcUCGCCGa- -3'
miRNA:   3'- -CCCGCa------AGUGCGAGcUGu---AGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 14109 0.68 0.712527
Target:  5'- -uGCGcgCACuGCUCGACAcCACCGg- -3'
miRNA:   3'- ccCGCaaGUG-CGAGCUGUaGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 28654 0.75 0.34026
Target:  5'- cGGGCaUUC-CGCUCGGCAagaUCACCGc- -3'
miRNA:   3'- -CCCGcAAGuGCGAGCUGU---AGUGGUac -5'
26395 5' -52.9 NC_005345.2 + 16202 0.72 0.502636
Target:  5'- cGGCGUccgccUCGCGCUCGACAagcagcugCGCUAa- -3'
miRNA:   3'- cCCGCA-----AGUGCGAGCUGUa-------GUGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.