miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26396 3' -56.7 NC_005345.2 + 45844 0.66 0.605452
Target:  5'- cGGCGGCgcgGGcgacgaUCGugGGGGCGGGga-GCc -3'
miRNA:   3'- uCCGUCGa--CC------AGU--UCCUGCCCaagCG- -5'
26396 3' -56.7 NC_005345.2 + 6543 0.66 0.605452
Target:  5'- gGGGCGGggcGGUgGGGGACGuGGcuaCGCg -3'
miRNA:   3'- -UCCGUCga-CCAgUUCCUGC-CCaa-GCG- -5'
26396 3' -56.7 NC_005345.2 + 3163 0.66 0.605452
Target:  5'- cGGCgAGCUcGUCGGGGugcCGGGUcgGCg -3'
miRNA:   3'- uCCG-UCGAcCAGUUCCu--GCCCAagCG- -5'
26396 3' -56.7 NC_005345.2 + 28406 0.66 0.605452
Target:  5'- cGGCAGC-GG-CAggcAGGGCGGaucggUCGCc -3'
miRNA:   3'- uCCGUCGaCCaGU---UCCUGCCca---AGCG- -5'
26396 3' -56.7 NC_005345.2 + 48546 0.66 0.594474
Target:  5'- ---aGGUUGGUCAGGauGCGGGcgUCGCg -3'
miRNA:   3'- uccgUCGACCAGUUCc-UGCCCa-AGCG- -5'
26396 3' -56.7 NC_005345.2 + 34389 0.66 0.594474
Target:  5'- cGGCGgucuccgcGCUGGgCAAGGugGGcggCGCc -3'
miRNA:   3'- uCCGU--------CGACCaGUUCCugCCcaaGCG- -5'
26396 3' -56.7 NC_005345.2 + 30313 0.66 0.594474
Target:  5'- uGGCGGCguacgcaacGGUCGAGGACuaccaGGccCGCg -3'
miRNA:   3'- uCCGUCGa--------CCAGUUCCUGc----CCaaGCG- -5'
26396 3' -56.7 NC_005345.2 + 10392 0.66 0.587902
Target:  5'- gAGGC-GCaGGUCAAGGuucgcgugacgcuguGCGaGG-UCGCg -3'
miRNA:   3'- -UCCGuCGaCCAGUUCC---------------UGC-CCaAGCG- -5'
26396 3' -56.7 NC_005345.2 + 4281 0.66 0.583528
Target:  5'- cGGGCAGCUcGGgCucGGGCuGcGGUUCGa -3'
miRNA:   3'- -UCCGUCGA-CCaGuuCCUG-C-CCAAGCg -5'
26396 3' -56.7 NC_005345.2 + 22385 0.66 0.583528
Target:  5'- cGGUuccGGCUcGGUCGagcuguacGGGACGGGccgguucaUCGCu -3'
miRNA:   3'- uCCG---UCGA-CCAGU--------UCCUGCCCa-------AGCG- -5'
26396 3' -56.7 NC_005345.2 + 24967 0.66 0.580251
Target:  5'- cGGGCGGCcGGUCGAGuGGCaagugcccgucgucGaGGUgcUCGCc -3'
miRNA:   3'- -UCCGUCGaCCAGUUC-CUG--------------C-CCA--AGCG- -5'
26396 3' -56.7 NC_005345.2 + 23677 0.67 0.561766
Target:  5'- -cGCGGCcGGUC--GGGCGGGccgagCGCa -3'
miRNA:   3'- ucCGUCGaCCAGuuCCUGCCCaa---GCG- -5'
26396 3' -56.7 NC_005345.2 + 35668 0.67 0.561766
Target:  5'- aAGGCcGUuugGGaCAAGGucgcCGGGUUCGUc -3'
miRNA:   3'- -UCCGuCGa--CCaGUUCCu---GCCCAAGCG- -5'
26396 3' -56.7 NC_005345.2 + 31159 0.67 0.550966
Target:  5'- cGGguGCgcggGGUCgAAGuGCGGGUgCGUa -3'
miRNA:   3'- uCCguCGa---CCAG-UUCcUGCCCAaGCG- -5'
26396 3' -56.7 NC_005345.2 + 40759 0.67 0.546663
Target:  5'- cGGCAGCggcucgucgggccGGUCGGccGGcGCGGGcgugUCGCg -3'
miRNA:   3'- uCCGUCGa------------CCAGUU--CC-UGCCCa---AGCG- -5'
26396 3' -56.7 NC_005345.2 + 29685 0.67 0.54023
Target:  5'- cAGGCAGCgucuaccGUCGcgGGaGACGGGgaCGUg -3'
miRNA:   3'- -UCCGUCGac-----CAGU--UC-CUGCCCaaGCG- -5'
26396 3' -56.7 NC_005345.2 + 31919 0.67 0.54023
Target:  5'- uGGguGCgaGGUCGAGuaaagcucGGCGGGUgcgggUGCg -3'
miRNA:   3'- uCCguCGa-CCAGUUC--------CUGCCCAa----GCG- -5'
26396 3' -56.7 NC_005345.2 + 45558 0.67 0.51898
Target:  5'- -aGCGGCcgaGGUC-GGGGCGGGccggUUGCg -3'
miRNA:   3'- ucCGUCGa--CCAGuUCCUGCCCa---AGCG- -5'
26396 3' -56.7 NC_005345.2 + 10718 0.67 0.51898
Target:  5'- cGGCAGCUcGUCGGccGGAUGGccgCGCu -3'
miRNA:   3'- uCCGUCGAcCAGUU--CCUGCCcaaGCG- -5'
26396 3' -56.7 NC_005345.2 + 43323 0.67 0.51582
Target:  5'- cAGGCucgugcccuacgccGGCUGGUCcuacAAGGGCgaGGGggUGCc -3'
miRNA:   3'- -UCCG--------------UCGACCAG----UUCCUG--CCCaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.