miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26396 5' -58.3 NC_005345.2 + 39116 0.66 0.55225
Target:  5'- uCGGCGAGcaGCCCGCauGCGCAGuugaaaucgGCCGcGGc -3'
miRNA:   3'- -GCUGUUC--UGGGCG--CGCGUC---------UGGU-CCu -5'
26396 5' -58.3 NC_005345.2 + 38895 0.66 0.55225
Target:  5'- aCGGCAgAGAUCgGCGCccgGguGACCGcGGGg -3'
miRNA:   3'- -GCUGU-UCUGGgCGCG---CguCUGGU-CCU- -5'
26396 5' -58.3 NC_005345.2 + 47946 0.66 0.55225
Target:  5'- gCGGCGuGGCCCGCGgGcCGGACUg--- -3'
miRNA:   3'- -GCUGUuCUGGGCGCgC-GUCUGGuccu -5'
26396 5' -58.3 NC_005345.2 + 7348 0.66 0.55225
Target:  5'- gCGGuguGGCCCGCggugGCGCAG-CCGGGc -3'
miRNA:   3'- -GCUguuCUGGGCG----CGCGUCuGGUCCu -5'
26396 5' -58.3 NC_005345.2 + 46676 0.66 0.55225
Target:  5'- --uCGAGcucGCUCGCGCGCAGgACUGGGc -3'
miRNA:   3'- gcuGUUC---UGGGCGCGCGUC-UGGUCCu -5'
26396 5' -58.3 NC_005345.2 + 36814 0.66 0.55119
Target:  5'- uGACGAagcgccucaugcuGGCCgGCgGUGCAGGCCGGa- -3'
miRNA:   3'- gCUGUU-------------CUGGgCG-CGCGUCUGGUCcu -5'
26396 5' -58.3 NC_005345.2 + 4260 0.66 0.549072
Target:  5'- gGACGAGGCCacguugcugcgccuCGCGaCGCGGccGCCGcGGGg -3'
miRNA:   3'- gCUGUUCUGG--------------GCGC-GCGUC--UGGU-CCU- -5'
26396 5' -58.3 NC_005345.2 + 5922 0.66 0.545899
Target:  5'- aCGcCGGGACCgGUGaccuguggguguggcUGCGGACCGGGc -3'
miRNA:   3'- -GCuGUUCUGGgCGC---------------GCGUCUGGUCCu -5'
26396 5' -58.3 NC_005345.2 + 47899 0.66 0.541678
Target:  5'- uCGAC-AGAUCCGCaCGCAGGuCCGcgaacGGAc -3'
miRNA:   3'- -GCUGuUCUGGGCGcGCGUCU-GGU-----CCU- -5'
26396 5' -58.3 NC_005345.2 + 34064 0.66 0.531174
Target:  5'- gCGGCGguAGGCCUgaucacgcagGCGCuGCAGGCCGGc- -3'
miRNA:   3'- -GCUGU--UCUGGG----------CGCG-CGUCUGGUCcu -5'
26396 5' -58.3 NC_005345.2 + 24346 0.66 0.531174
Target:  5'- aCGGCGGGAUCCGgcuCGCGaAGACCAugcGGu -3'
miRNA:   3'- -GCUGUUCUGGGC---GCGCgUCUGGU---CCu -5'
26396 5' -58.3 NC_005345.2 + 28966 0.66 0.531174
Target:  5'- aCGACAAGGCCC-CGCcGCAucggaaugcGGCgGGGc -3'
miRNA:   3'- -GCUGUUCUGGGcGCG-CGU---------CUGgUCCu -5'
26396 5' -58.3 NC_005345.2 + 35312 0.66 0.520745
Target:  5'- gCGugGGGACCCGgGuUGCGGGgCGGa- -3'
miRNA:   3'- -GCugUUCUGGGCgC-GCGUCUgGUCcu -5'
26396 5' -58.3 NC_005345.2 + 41197 0.66 0.520745
Target:  5'- cCGACGGGAucCCCGCcCGCcGGcucgacuucuACCAGGGa -3'
miRNA:   3'- -GCUGUUCU--GGGCGcGCG-UC----------UGGUCCU- -5'
26396 5' -58.3 NC_005345.2 + 31430 0.66 0.520745
Target:  5'- gCGAUGAG-CCCGaggaugaGCGCGGgugcgaggcGCCGGGGu -3'
miRNA:   3'- -GCUGUUCuGGGCg------CGCGUC---------UGGUCCU- -5'
26396 5' -58.3 NC_005345.2 + 10292 0.66 0.520745
Target:  5'- gCGACAccGGACCCgagcgggaaGCGgGCAGAgCGGa- -3'
miRNA:   3'- -GCUGU--UCUGGG---------CGCgCGUCUgGUCcu -5'
26396 5' -58.3 NC_005345.2 + 10779 0.66 0.520745
Target:  5'- cCGuCGAGACagCCGCGCugcggcagGCGGACCGGc- -3'
miRNA:   3'- -GCuGUUCUG--GGCGCG--------CGUCUGGUCcu -5'
26396 5' -58.3 NC_005345.2 + 2038 0.66 0.520745
Target:  5'- uCGAgcGGGCCCG-GCGCGGcCCGGcGGg -3'
miRNA:   3'- -GCUguUCUGGGCgCGCGUCuGGUC-CU- -5'
26396 5' -58.3 NC_005345.2 + 8371 0.66 0.520745
Target:  5'- gCGACAc-GCCCGCGCcgGCcGACCGGc- -3'
miRNA:   3'- -GCUGUucUGGGCGCG--CGuCUGGUCcu -5'
26396 5' -58.3 NC_005345.2 + 7158 0.66 0.519706
Target:  5'- gGACGggucGGACCCGCugucgcaggaacuGCgGCAGAUCGcGGAc -3'
miRNA:   3'- gCUGU----UCUGGGCG-------------CG-CGUCUGGU-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.