miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26396 5' -58.3 NC_005345.2 + 1232 0.68 0.420822
Target:  5'- uCGGCGuacguccguucgcGGACCUGCGUGCGGAUCuugucgAGGu -3'
miRNA:   3'- -GCUGU-------------UCUGGGCGCGCGUCUGG------UCCu -5'
26396 5' -58.3 NC_005345.2 + 1887 0.67 0.469924
Target:  5'- uCGuu-AGACCCGCGagGCAGGCCGacGGu -3'
miRNA:   3'- -GCuguUCUGGGCGCg-CGUCUGGU--CCu -5'
26396 5' -58.3 NC_005345.2 + 2038 0.66 0.520745
Target:  5'- uCGAgcGGGCCCG-GCGCGGcCCGGcGGg -3'
miRNA:   3'- -GCUguUCUGGGCgCGCGUCuGGUC-CU- -5'
26396 5' -58.3 NC_005345.2 + 2596 0.69 0.368066
Target:  5'- aCGGCGAGggauACCUcauGCGCGCGGACggaguCGGGGc -3'
miRNA:   3'- -GCUGUUC----UGGG---CGCGCGUCUG-----GUCCU- -5'
26396 5' -58.3 NC_005345.2 + 2677 0.67 0.440672
Target:  5'- uCGGCGAGGCCgCGgGCGUugucGAUguGGGu -3'
miRNA:   3'- -GCUGUUCUGG-GCgCGCGu---CUGguCCU- -5'
26396 5' -58.3 NC_005345.2 + 3417 0.67 0.489965
Target:  5'- aCGACGugucgguguGGACgCUGCGCacGCAGACCcccgcccgccGGGAc -3'
miRNA:   3'- -GCUGU---------UCUG-GGCGCG--CGUCUGG----------UCCU- -5'
26396 5' -58.3 NC_005345.2 + 3485 0.71 0.282425
Target:  5'- uCGACGuuACCCGCGCG-AGGCUcgugGGGAu -3'
miRNA:   3'- -GCUGUucUGGGCGCGCgUCUGG----UCCU- -5'
26396 5' -58.3 NC_005345.2 + 4260 0.66 0.549072
Target:  5'- gGACGAGGCCacguugcugcgccuCGCGaCGCGGccGCCGcGGGg -3'
miRNA:   3'- gCUGUUCUGG--------------GCGC-GCGUC--UGGU-CCU- -5'
26396 5' -58.3 NC_005345.2 + 4408 0.77 0.099798
Target:  5'- uCGACAAGGCCCGgaaGCAGGCgCGGGAg -3'
miRNA:   3'- -GCUGUUCUGGGCgcgCGUCUG-GUCCU- -5'
26396 5' -58.3 NC_005345.2 + 4600 0.68 0.431153
Target:  5'- gCGACucGGACCCGCuCGCGGcguACCuGGu -3'
miRNA:   3'- -GCUGu-UCUGGGCGcGCGUC---UGGuCCu -5'
26396 5' -58.3 NC_005345.2 + 5922 0.66 0.545899
Target:  5'- aCGcCGGGACCgGUGaccuguggguguggcUGCGGACCGGGc -3'
miRNA:   3'- -GCuGUUCUGGgCGC---------------GCGUCUGGUCCu -5'
26396 5' -58.3 NC_005345.2 + 6489 0.68 0.421755
Target:  5'- gCGGCGAG-CCCGagGCGUGGACgccgCAGGGc -3'
miRNA:   3'- -GCUGUUCuGGGCg-CGCGUCUG----GUCCU- -5'
26396 5' -58.3 NC_005345.2 + 7115 0.66 0.500134
Target:  5'- gCGACGuguGGCgCCGCGCGaacCGGGCgGGGc -3'
miRNA:   3'- -GCUGUu--CUG-GGCGCGC---GUCUGgUCCu -5'
26396 5' -58.3 NC_005345.2 + 7158 0.66 0.519706
Target:  5'- gGACGggucGGACCCGCugucgcaggaacuGCgGCAGAUCGcGGAc -3'
miRNA:   3'- gCUGU----UCUGGGCG-------------CG-CGUCUGGU-CCU- -5'
26396 5' -58.3 NC_005345.2 + 7266 0.67 0.468933
Target:  5'- cCGACAAGcgucgccGCCCGCGCGaucGCCgAGGc -3'
miRNA:   3'- -GCUGUUC-------UGGGCGCGCgucUGG-UCCu -5'
26396 5' -58.3 NC_005345.2 + 7348 0.66 0.55225
Target:  5'- gCGGuguGGCCCGCggugGCGCAG-CCGGGc -3'
miRNA:   3'- -GCUguuCUGGGCG----CGCGUCuGGUCCu -5'
26396 5' -58.3 NC_005345.2 + 7594 0.67 0.479893
Target:  5'- aCGGCGAG---CGCGCGCAcgacgucgucGACCAGGu -3'
miRNA:   3'- -GCUGUUCuggGCGCGCGU----------CUGGUCCu -5'
26396 5' -58.3 NC_005345.2 + 8371 0.66 0.520745
Target:  5'- gCGACAc-GCCCGCGCcgGCcGACCGGc- -3'
miRNA:   3'- -GCUGUucUGGGCGCG--CGuCUGGUCcu -5'
26396 5' -58.3 NC_005345.2 + 9503 0.76 0.121226
Target:  5'- uGGCAgucgcGGGCCCuguGCGCGCAGACCGacccGGAg -3'
miRNA:   3'- gCUGU-----UCUGGG---CGCGCGUCUGGU----CCU- -5'
26396 5' -58.3 NC_005345.2 + 10285 0.68 0.385435
Target:  5'- cCGAgGAGAUgCG-GCGCGGGCUguGGGAg -3'
miRNA:   3'- -GCUgUUCUGgGCgCGCGUCUGG--UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.