miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26397 3' -60 NC_005345.2 + 10624 0.66 0.456136
Target:  5'- gGUCGGCCCGGG-UCGagcagCaCGC-GUGACu -3'
miRNA:   3'- -CAGUUGGGCCCgAGCa----G-GCGcCACUG- -5'
26397 3' -60 NC_005345.2 + 22657 0.66 0.440809
Target:  5'- gGUCGACCUGcGgacggucgggcagucGCUCGUCgugGCGGUGAa -3'
miRNA:   3'- -CAGUUGGGC-C---------------CGAGCAGg--CGCCACUg -5'
26397 3' -60 NC_005345.2 + 31872 0.66 0.437023
Target:  5'- cGUgGGCaCGGGUUCGggUGCGGUGAg -3'
miRNA:   3'- -CAgUUGgGCCCGAGCagGCGCCACUg -5'
26397 3' -60 NC_005345.2 + 21695 0.66 0.437023
Target:  5'- --gGGCUCGGGCUUGcagugacagCCGgGGUGAa -3'
miRNA:   3'- cagUUGGGCCCGAGCa--------GGCgCCACUg -5'
26397 3' -60 NC_005345.2 + 13478 0.66 0.437023
Target:  5'- --uGGCCCGacGGCaccgCGUCggUGCGGUGGCg -3'
miRNA:   3'- cagUUGGGC--CCGa---GCAG--GCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 32072 0.66 0.427641
Target:  5'- cUCGACCuCGGGCUCGgCCuCGGg--- -3'
miRNA:   3'- cAGUUGG-GCCCGAGCaGGcGCCacug -5'
26397 3' -60 NC_005345.2 + 38904 0.67 0.40924
Target:  5'- aUCGgcGCCCGGGUga--CCGCGG-GGCg -3'
miRNA:   3'- cAGU--UGGGCCCGagcaGGCGCCaCUG- -5'
26397 3' -60 NC_005345.2 + 16733 0.67 0.391341
Target:  5'- cGUCGGCCgcCGGGUagaucgugaUCGUCaguucguaCGCGGUGAg -3'
miRNA:   3'- -CAGUUGG--GCCCG---------AGCAG--------GCGCCACUg -5'
26397 3' -60 NC_005345.2 + 16348 0.67 0.37396
Target:  5'- cGUCGGCggcaUCGcGGC-CGgcgCCGCGGUGAUc -3'
miRNA:   3'- -CAGUUG----GGC-CCGaGCa--GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 38502 0.67 0.37396
Target:  5'- -cCGACCCGGGCgaccauggCGagccCCGgGGUGGg -3'
miRNA:   3'- caGUUGGGCCCGa-------GCa---GGCgCCACUg -5'
26397 3' -60 NC_005345.2 + 9962 0.67 0.364626
Target:  5'- -gCGGCCCGGGUUCGggCUGgGGUccgccucGACc -3'
miRNA:   3'- caGUUGGGCCCGAGCa-GGCgCCA-------CUG- -5'
26397 3' -60 NC_005345.2 + 7978 0.68 0.3408
Target:  5'- cGUCGugUCGuGC-CGUCCGCGuUGACg -3'
miRNA:   3'- -CAGUugGGCcCGaGCAGGCGCcACUG- -5'
26397 3' -60 NC_005345.2 + 30268 0.68 0.339999
Target:  5'- -gCAGgCCGGGCUCGUcgagcccgagcagCCGaaggaguagccCGGUGGCg -3'
miRNA:   3'- caGUUgGGCCCGAGCA-------------GGC-----------GCCACUG- -5'
26397 3' -60 NC_005345.2 + 26339 0.68 0.33285
Target:  5'- uUCGugCCGucGC-CGUCCGCGGUGuggGCg -3'
miRNA:   3'- cAGUugGGCc-CGaGCAGGCGCCAC---UG- -5'
26397 3' -60 NC_005345.2 + 39244 0.68 0.332062
Target:  5'- gGUCGGCCCGGacgggaagcgcacGUUCGUgCGCGGcgcgucggGACu -3'
miRNA:   3'- -CAGUUGGGCC-------------CGAGCAgGCGCCa-------CUG- -5'
26397 3' -60 NC_005345.2 + 11565 0.68 0.32349
Target:  5'- uUCAucGCCCGGcaGCUCGacgacgggcgccUCGCGGUGGCg -3'
miRNA:   3'- cAGU--UGGGCC--CGAGCa-----------GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 45756 0.68 0.31736
Target:  5'- cUCAGCCCGaaCUCG-CCGCcGUGGCa -3'
miRNA:   3'- cAGUUGGGCccGAGCaGGCGcCACUG- -5'
26397 3' -60 NC_005345.2 + 37788 0.68 0.31736
Target:  5'- -gCGACCgGGGCUgcugcCGUUgGCGGUGcCg -3'
miRNA:   3'- caGUUGGgCCCGA-----GCAGgCGCCACuG- -5'
26397 3' -60 NC_005345.2 + 30691 0.69 0.302419
Target:  5'- -aCGAUCCGgccGGCUgCGgguggCCGCGGUGAUc -3'
miRNA:   3'- caGUUGGGC---CCGA-GCa----GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 48315 0.69 0.288025
Target:  5'- --uGAUCCccuGCUCGUCCGCGGUguGACg -3'
miRNA:   3'- cagUUGGGcc-CGAGCAGGCGCCA--CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.