miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26397 3' -60 NC_005345.2 + 4284 0.77 0.082548
Target:  5'- -gCAGCUCGGGCUCGggCUGCGGUucGACc -3'
miRNA:   3'- caGUUGGGCCCGAGCa-GGCGCCA--CUG- -5'
26397 3' -60 NC_005345.2 + 4785 0.71 0.229894
Target:  5'- -cCuuUCCGGGCUCG-CCGCgGGUGGg -3'
miRNA:   3'- caGuuGGGCCCGAGCaGGCG-CCACUg -5'
26397 3' -60 NC_005345.2 + 5611 0.74 0.128415
Target:  5'- --gGGCgCCGGGCUCGUggccgaCGCGGUGAUc -3'
miRNA:   3'- cagUUG-GGCCCGAGCAg-----GCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 6358 0.76 0.092286
Target:  5'- -gCGGCgCCGGGUUgG-CCGCGGUGGCg -3'
miRNA:   3'- caGUUG-GGCCCGAgCaGGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 7978 0.68 0.3408
Target:  5'- cGUCGugUCGuGC-CGUCCGCGuUGACg -3'
miRNA:   3'- -CAGUugGGCcCGaGCAGGCGCcACUG- -5'
26397 3' -60 NC_005345.2 + 8825 0.69 0.278962
Target:  5'- -cCGG-CCGGGCUCGUCUGCcgcggcugcggcacGGUGAa -3'
miRNA:   3'- caGUUgGGCCCGAGCAGGCG--------------CCACUg -5'
26397 3' -60 NC_005345.2 + 9439 0.73 0.16809
Target:  5'- uGUCGugGCCCGaGCUCGUCCcggGCGGUGuCc -3'
miRNA:   3'- -CAGU--UGGGCcCGAGCAGG---CGCCACuG- -5'
26397 3' -60 NC_005345.2 + 9962 0.67 0.364626
Target:  5'- -gCGGCCCGGGUUCGggCUGgGGUccgccucGACc -3'
miRNA:   3'- caGUUGGGCCCGAGCa-GGCgCCA-------CUG- -5'
26397 3' -60 NC_005345.2 + 10624 0.66 0.456136
Target:  5'- gGUCGGCCCGGG-UCGagcagCaCGC-GUGACu -3'
miRNA:   3'- -CAGUUGGGCCCgAGCa----G-GCGcCACUG- -5'
26397 3' -60 NC_005345.2 + 11565 0.68 0.32349
Target:  5'- uUCAucGCCCGGcaGCUCGacgacgggcgccUCGCGGUGGCg -3'
miRNA:   3'- cAGU--UGGGCC--CGAGCa-----------GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 13478 0.66 0.437023
Target:  5'- --uGGCCCGacGGCaccgCGUCggUGCGGUGGCg -3'
miRNA:   3'- cagUUGGGC--CCGa---GCAG--GCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 16348 0.67 0.37396
Target:  5'- cGUCGGCggcaUCGcGGC-CGgcgCCGCGGUGAUc -3'
miRNA:   3'- -CAGUUG----GGC-CCGaGCa--GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 16733 0.67 0.391341
Target:  5'- cGUCGGCCgcCGGGUagaucgugaUCGUCaguucguaCGCGGUGAg -3'
miRNA:   3'- -CAGUUGG--GCCCG---------AGCAG--------GCGCCACUg -5'
26397 3' -60 NC_005345.2 + 17377 0.73 0.151046
Target:  5'- cUCGuACUCGGuGC-CGUCCGCGGUGGu -3'
miRNA:   3'- cAGU-UGGGCC-CGaGCAGGCGCCACUg -5'
26397 3' -60 NC_005345.2 + 21695 0.66 0.437023
Target:  5'- --gGGCUCGGGCUUGcagugacagCCGgGGUGAa -3'
miRNA:   3'- cagUUGGGCCCGAGCa--------GGCgCCACUg -5'
26397 3' -60 NC_005345.2 + 22657 0.66 0.440809
Target:  5'- gGUCGACCUGcGgacggucgggcagucGCUCGUCgugGCGGUGAa -3'
miRNA:   3'- -CAGUUGGGC-C---------------CGAGCAGg--CGCCACUg -5'
26397 3' -60 NC_005345.2 + 25733 0.72 0.196885
Target:  5'- ---cACCCGGGCgUCG-CgGUGGUGGCa -3'
miRNA:   3'- caguUGGGCCCG-AGCaGgCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 26339 0.68 0.33285
Target:  5'- uUCGugCCGucGC-CGUCCGCGGUGuggGCg -3'
miRNA:   3'- cAGUugGGCc-CGaGCAGGCGCCAC---UG- -5'
26397 3' -60 NC_005345.2 + 29468 0.72 0.196371
Target:  5'- cGUCGGCCCGGuccaacucgucgaGCUCGUCgGCGcUGAa -3'
miRNA:   3'- -CAGUUGGGCC-------------CGAGCAGgCGCcACUg -5'
26397 3' -60 NC_005345.2 + 30268 0.68 0.339999
Target:  5'- -gCAGgCCGGGCUCGUcgagcccgagcagCCGaaggaguagccCGGUGGCg -3'
miRNA:   3'- caGUUgGGCCCGAGCA-------------GGC-----------GCCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.