miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26397 3' -60 NC_005345.2 + 48315 0.69 0.288025
Target:  5'- --uGAUCCccuGCUCGUCCGCGGUguGACg -3'
miRNA:   3'- cagUUGGGcc-CGAGCAGGCGCCA--CUG- -5'
26397 3' -60 NC_005345.2 + 13478 0.66 0.437023
Target:  5'- --uGGCCCGacGGCaccgCGUCggUGCGGUGGCg -3'
miRNA:   3'- cagUUGGGC--CCGa---GCAG--GCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 32214 1.08 0.000367
Target:  5'- cGUCAACCCGGGCUCGUCCGCGGUGACc -3'
miRNA:   3'- -CAGUUGGGCCCGAGCAGGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 5611 0.74 0.128415
Target:  5'- --gGGCgCCGGGCUCGUggccgaCGCGGUGAUc -3'
miRNA:   3'- cagUUG-GGCCCGAGCAg-----GCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 30814 0.74 0.143125
Target:  5'- cUCGACCCGGGC-CGacgUCGCGGcgUGGCu -3'
miRNA:   3'- cAGUUGGGCCCGaGCa--GGCGCC--ACUG- -5'
26397 3' -60 NC_005345.2 + 9439 0.73 0.16809
Target:  5'- uGUCGugGCCCGaGCUCGUCCcggGCGGUGuCc -3'
miRNA:   3'- -CAGU--UGGGCcCGAGCAGG---CGCCACuG- -5'
26397 3' -60 NC_005345.2 + 25733 0.72 0.196885
Target:  5'- ---cACCCGGGCgUCG-CgGUGGUGGCa -3'
miRNA:   3'- caguUGGGCCCG-AGCaGgCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 38038 0.71 0.224084
Target:  5'- cGUCGACuCUGuGGCaUCGgaUCGCGGUGGCg -3'
miRNA:   3'- -CAGUUG-GGC-CCG-AGCa-GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 41836 0.7 0.241281
Target:  5'- uGUCGACgCCGucgcaccgcGGCUCGUCCuGCGGUucgccucGGCg -3'
miRNA:   3'- -CAGUUG-GGC---------CCGAGCAGG-CGCCA-------CUG- -5'
26397 3' -60 NC_005345.2 + 38904 0.67 0.40924
Target:  5'- aUCGgcGCCCGGGUga--CCGCGG-GGCg -3'
miRNA:   3'- cAGU--UGGGCCCGagcaGGCGCCaCUG- -5'
26397 3' -60 NC_005345.2 + 9962 0.67 0.364626
Target:  5'- -gCGGCCCGGGUUCGggCUGgGGUccgccucGACc -3'
miRNA:   3'- caGUUGGGCCCGAGCa-GGCgCCA-------CUG- -5'
26397 3' -60 NC_005345.2 + 30268 0.68 0.339999
Target:  5'- -gCAGgCCGGGCUCGUcgagcccgagcagCCGaaggaguagccCGGUGGCg -3'
miRNA:   3'- caGUUgGGCCCGAGCA-------------GGC-----------GCCACUG- -5'
26397 3' -60 NC_005345.2 + 30691 0.69 0.302419
Target:  5'- -aCGAUCCGgccGGCUgCGgguggCCGCGGUGAUc -3'
miRNA:   3'- caGUUGGGC---CCGA-GCa----GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 16348 0.67 0.37396
Target:  5'- cGUCGGCggcaUCGcGGC-CGgcgCCGCGGUGAUc -3'
miRNA:   3'- -CAGUUG----GGC-CCGaGCa--GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 45756 0.68 0.31736
Target:  5'- cUCAGCCCGaaCUCG-CCGCcGUGGCa -3'
miRNA:   3'- cAGUUGGGCccGAGCaGGCGcCACUG- -5'
26397 3' -60 NC_005345.2 + 26339 0.68 0.33285
Target:  5'- uUCGugCCGucGC-CGUCCGCGGUGuggGCg -3'
miRNA:   3'- cAGUugGGCc-CGaGCAGGCGCCAC---UG- -5'
26397 3' -60 NC_005345.2 + 38502 0.67 0.37396
Target:  5'- -cCGACCCGGGCgaccauggCGagccCCGgGGUGGg -3'
miRNA:   3'- caGUUGGGCCCGa-------GCa---GGCgCCACUg -5'
26397 3' -60 NC_005345.2 + 10624 0.66 0.456136
Target:  5'- gGUCGGCCCGGG-UCGagcagCaCGC-GUGACu -3'
miRNA:   3'- -CAGUUGGGCCCgAGCa----G-GCGcCACUG- -5'
26397 3' -60 NC_005345.2 + 11565 0.68 0.32349
Target:  5'- uUCAucGCCCGGcaGCUCGacgacgggcgccUCGCGGUGGCg -3'
miRNA:   3'- cAGU--UGGGCC--CGAGCa-----------GGCGCCACUG- -5'
26397 3' -60 NC_005345.2 + 39244 0.68 0.332062
Target:  5'- gGUCGGCCCGGacgggaagcgcacGUUCGUgCGCGGcgcgucggGACu -3'
miRNA:   3'- -CAGUUGGGCC-------------CGAGCAgGCGCCa-------CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.