miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26397 5' -56.9 NC_005345.2 + 40477 0.66 0.609309
Target:  5'- cGGcCACCGcCGCggcgagcagcaGCACGG-CGAGGUa -3'
miRNA:   3'- cCCaGUGGU-GCG-----------CGUGCCaGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 36377 0.66 0.609309
Target:  5'- cGGGUgGuCCACGCGCgccacgucugccGCGG-CcGGGUg -3'
miRNA:   3'- -CCCAgU-GGUGCGCG------------UGCCaGuUCCAa -5'
26397 5' -56.9 NC_005345.2 + 35944 0.66 0.608211
Target:  5'- gGGGugugcUCGCCGCGCGgGCugccgcucgggccGGUCAucGGUUg -3'
miRNA:   3'- -CCC-----AGUGGUGCGCgUG-------------CCAGUu-CCAA- -5'
26397 5' -56.9 NC_005345.2 + 4241 0.66 0.598337
Target:  5'- uGGUCGCCGCuGCGgaGCGGgaCGAGGc- -3'
miRNA:   3'- cCCAGUGGUG-CGCg-UGCCa-GUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 31310 0.66 0.598337
Target:  5'- cGGG-CGCUGC-UGCGCGGUCugGAGGg- -3'
miRNA:   3'- -CCCaGUGGUGcGCGUGCCAG--UUCCaa -5'
26397 5' -56.9 NC_005345.2 + 913 0.66 0.576489
Target:  5'- cGGGUC-CCGCagaucgaccgGCGuCACGucGUCGAGGUc -3'
miRNA:   3'- -CCCAGuGGUG----------CGC-GUGC--CAGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 31255 0.66 0.565629
Target:  5'- cGGGUgcgCACuCGgGUGCGCGGgugCGGGGg- -3'
miRNA:   3'- -CCCA---GUG-GUgCGCGUGCCa--GUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 25787 0.66 0.562382
Target:  5'- cGGG-CGCCucggcccgcucccaGCGCaGCACGGUCugcGGGa- -3'
miRNA:   3'- -CCCaGUGG--------------UGCG-CGUGCCAGu--UCCaa -5'
26397 5' -56.9 NC_005345.2 + 32905 0.66 0.554824
Target:  5'- uGGGggCGCUGCGgGC-CGGUCGaucagGGGUa -3'
miRNA:   3'- -CCCa-GUGGUGCgCGuGCCAGU-----UCCAa -5'
26397 5' -56.9 NC_005345.2 + 25289 0.66 0.554824
Target:  5'- aGGGcUCGCCGucgucccggcCGgGCugGG-CAAGGUUc -3'
miRNA:   3'- -CCC-AGUGGU----------GCgCGugCCaGUUCCAA- -5'
26397 5' -56.9 NC_005345.2 + 43457 0.66 0.554824
Target:  5'- aGGGacggcggcgaguUCGCgGCGCaGCGCGGUCGGcucGGUc -3'
miRNA:   3'- -CCC------------AGUGgUGCG-CGUGCCAGUU---CCAa -5'
26397 5' -56.9 NC_005345.2 + 39841 0.66 0.553746
Target:  5'- cGGGUCGCCgACGaacucaaCGC-CGGccgCGAGGUa -3'
miRNA:   3'- -CCCAGUGG-UGC-------GCGuGCCa--GUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 2761 0.67 0.544079
Target:  5'- uGGagcgCGCCACGCGCGgCGGcCucGGUa -3'
miRNA:   3'- cCCa---GUGGUGCGCGU-GCCaGuuCCAa -5'
26397 5' -56.9 NC_005345.2 + 33457 0.67 0.544079
Target:  5'- -uGUCACCACcUGCGgGGUCuAGGUc -3'
miRNA:   3'- ccCAGUGGUGcGCGUgCCAGuUCCAa -5'
26397 5' -56.9 NC_005345.2 + 29263 0.67 0.543009
Target:  5'- cGGcUCGCCcGCaacaucgGCGCGCGGuUCGAGGUc -3'
miRNA:   3'- cCC-AGUGG-UG-------CGCGUGCC-AGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 12483 0.67 0.533404
Target:  5'- -cGUCcguGCgCACGCGgGCGGaUCGAGGUUu -3'
miRNA:   3'- ccCAG---UG-GUGCGCgUGCC-AGUUCCAA- -5'
26397 5' -56.9 NC_005345.2 + 31902 0.67 0.533404
Target:  5'- gGGGaUCGgCGgGUGCAUGGgugCGAGGUc -3'
miRNA:   3'- -CCC-AGUgGUgCGCGUGCCa--GUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 34611 0.67 0.522804
Target:  5'- cGGGcgaggaGCCAgCGUGCgGCGGUCGGGGc- -3'
miRNA:   3'- -CCCag----UGGU-GCGCG-UGCCAGUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 11112 0.67 0.522804
Target:  5'- uGGGUCGCCGCGCaGCucaccgACGGgcuugugcCGGGGc- -3'
miRNA:   3'- -CCCAGUGGUGCG-CG------UGCCa-------GUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 12588 0.67 0.500818
Target:  5'- cGGuGUCGCCGCccccgaaGCGCACGaGcUCGGGGc- -3'
miRNA:   3'- -CC-CAGUGGUG-------CGCGUGC-C-AGUUCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.