miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26397 5' -56.9 NC_005345.2 + 31711 0.68 0.491521
Target:  5'- cGGUCcUCGgGUGCGCGGaCGGGGUUn -3'
miRNA:   3'- cCCAGuGGUgCGCGUGCCaGUUCCAA- -5'
26397 5' -56.9 NC_005345.2 + 22655 0.68 0.491521
Target:  5'- gGGGUCgACC-UGCGgACGGUCGGGc-- -3'
miRNA:   3'- -CCCAG-UGGuGCGCgUGCCAGUUCcaa -5'
26397 5' -56.9 NC_005345.2 + 34392 0.68 0.481285
Target:  5'- cGGUC-UC-CGCGCugGG-CAAGGUg -3'
miRNA:   3'- cCCAGuGGuGCGCGugCCaGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 30310 0.68 0.461132
Target:  5'- cGGUgGCgGCGUacGCaACGGUCGAGGa- -3'
miRNA:   3'- cCCAgUGgUGCG--CG-UGCCAGUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 45198 0.68 0.461132
Target:  5'- gGGGUCGCCuCGaCGUAcagacgccCGGUCAcggGGGUg -3'
miRNA:   3'- -CCCAGUGGuGC-GCGU--------GCCAGU---UCCAa -5'
26397 5' -56.9 NC_005345.2 + 22617 0.68 0.451224
Target:  5'- --uUCGCCACGUGCAgGauGUCGAGGg- -3'
miRNA:   3'- cccAGUGGUGCGCGUgC--CAGUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 16573 0.68 0.441433
Target:  5'- cGGGUCuCCuucgaGCGUGCGCGgGUCAAcGGa- -3'
miRNA:   3'- -CCCAGuGG-----UGCGCGUGC-CAGUU-CCaa -5'
26397 5' -56.9 NC_005345.2 + 13849 0.69 0.431764
Target:  5'- cGGGUCcCCACGCuCGCGGaCAAGu-- -3'
miRNA:   3'- -CCCAGuGGUGCGcGUGCCaGUUCcaa -5'
26397 5' -56.9 NC_005345.2 + 26914 0.69 0.422221
Target:  5'- --cUCGCCGucgacgucgaGCGCAUGGUCGAGGUc -3'
miRNA:   3'- cccAGUGGUg---------CGCGUGCCAGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 22352 0.69 0.422221
Target:  5'- cGGGUCGCUGC-CGCACGGgCGAcGUa -3'
miRNA:   3'- -CCCAGUGGUGcGCGUGCCaGUUcCAa -5'
26397 5' -56.9 NC_005345.2 + 44381 0.69 0.412805
Target:  5'- cGGGUCGCCgGCGaggGUGCcGUCGAGGUc -3'
miRNA:   3'- -CCCAGUGG-UGCg--CGUGcCAGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 22068 0.69 0.403519
Target:  5'- uGGGUCcggcacACCGCGCGCaagguuccguugACGGUCGGcGGc- -3'
miRNA:   3'- -CCCAG------UGGUGCGCG------------UGCCAGUU-CCaa -5'
26397 5' -56.9 NC_005345.2 + 20318 0.7 0.376472
Target:  5'- cGGGaUCAUCGacaccaaccUGCcCACGGUCAAGGUg -3'
miRNA:   3'- -CCC-AGUGGU---------GCGcGUGCCAGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 31737 0.7 0.350674
Target:  5'- cGGGUgCACCuCGgGUGCGGgugCGGGGUg -3'
miRNA:   3'- -CCCA-GUGGuGCgCGUGCCa--GUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 30961 0.7 0.350674
Target:  5'- cGGGUgCAUUggaACgGCGCGCGGuUCGAGGUg -3'
miRNA:   3'- -CCCA-GUGG---UG-CGCGUGCC-AGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 28111 0.72 0.288175
Target:  5'- cGGUCGCCG-GCGCGCGuGcCGAGGa- -3'
miRNA:   3'- cCCAGUGGUgCGCGUGC-CaGUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 8434 0.72 0.264388
Target:  5'- cGGGUCGCugucgacgacgagCACGgGCGCGGUCGcgacucccguuucgGGGUUc -3'
miRNA:   3'- -CCCAGUG-------------GUGCgCGUGCCAGU--------------UCCAA- -5'
26397 5' -56.9 NC_005345.2 + 6859 0.78 0.100455
Target:  5'- aGGGaCGCCcacgACGCGC-CGGUCGAGGUg -3'
miRNA:   3'- -CCCaGUGG----UGCGCGuGCCAGUUCCAa -5'
26397 5' -56.9 NC_005345.2 + 14870 0.85 0.036479
Target:  5'- gGGGUCcuucACCGCGCGCAgcCGGUCAAGGg- -3'
miRNA:   3'- -CCCAG----UGGUGCGCGU--GCCAGUUCCaa -5'
26397 5' -56.9 NC_005345.2 + 32248 1.07 0.000883
Target:  5'- gGGGUCACCACGCGCACGGUCAAGGUUc -3'
miRNA:   3'- -CCCAGUGGUGCGCGUGCCAGUUCCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.