Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26398 | 3' | -50.2 | NC_005345.2 | + | 1751 | 0.67 | 0.899576 |
Target: 5'- aGGCAGGCgaCGUUUGACcgUCGGCCaUGGg -3' miRNA: 3'- -CUGUUCG--GCAAGCUGa-AGUUGGaGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 1785 | 0.66 | 0.913395 |
Target: 5'- gGGCAGGCCGcUCGAC--CGACCg--- -3' miRNA: 3'- -CUGUUCGGCaAGCUGaaGUUGGagcu -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 5600 | 0.67 | 0.899576 |
Target: 5'- cGGCGAGCUugUCGGCgaCGAgCUCGGc -3' miRNA: 3'- -CUGUUCGGcaAGCUGaaGUUgGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 8579 | 0.68 | 0.851303 |
Target: 5'- --uGAGCCGcUCGACgugaUCcguGCCUCGGu -3' miRNA: 3'- cugUUCGGCaAGCUGa---AGu--UGGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 8886 | 0.66 | 0.906633 |
Target: 5'- -cCGGGCCGUcgUCGACgUCG-CCgUCGAu -3' miRNA: 3'- cuGUUCGGCA--AGCUGaAGUuGG-AGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 9727 | 0.68 | 0.823687 |
Target: 5'- ----cGCCGgggUCGAgCgggUCGGCCUCGAu -3' miRNA: 3'- cuguuCGGCa--AGCU-Ga--AGUUGGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 10220 | 0.67 | 0.884591 |
Target: 5'- cGGCAAGCaCGaccccgUCGAggUCAAgCUCGAc -3' miRNA: 3'- -CUGUUCG-GCa-----AGCUgaAGUUgGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 10887 | 0.66 | 0.926021 |
Target: 5'- aGGCGGGCUgaGUUCGugUgaccgUCGugUUCGAc -3' miRNA: 3'- -CUGUUCGG--CAAGCugA-----AGUugGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 16165 | 0.68 | 0.860022 |
Target: 5'- cGCAcGCCGUaggucUCGcGCaggUCGGCCUCGAc -3' miRNA: 3'- cUGUuCGGCA-----AGC-UGa--AGUUGGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 16473 | 0.68 | 0.860022 |
Target: 5'- --gGGGUCaggUCGACcUCGGCCUCGAc -3' miRNA: 3'- cugUUCGGca-AGCUGaAGUUGGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 16942 | 0.69 | 0.773438 |
Target: 5'- cGGCcGGCCGcUCGACgagacGCCUCGGc -3' miRNA: 3'- -CUGuUCGGCaAGCUGaagu-UGGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 19195 | 0.66 | 0.931883 |
Target: 5'- cGACGAGCCcgaCGGCccCGACgUCGAg -3' miRNA: 3'- -CUGUUCGGcaaGCUGaaGUUGgAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 19355 | 0.66 | 0.926021 |
Target: 5'- gGGCGAGCgCGUagUCGuCUUCGAgggaCUCGGc -3' miRNA: 3'- -CUGUUCG-GCA--AGCuGAAGUUg---GAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 19491 | 0.7 | 0.762862 |
Target: 5'- gGACAcGCCG-UCGACggCGACCUUc- -3' miRNA: 3'- -CUGUuCGGCaAGCUGaaGUUGGAGcu -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 21183 | 0.73 | 0.571117 |
Target: 5'- cGACGGcgcaccGCCGUUCGGgUUCAcgcgcuccgccgACCUCGAc -3' miRNA: 3'- -CUGUU------CGGCAAGCUgAAGU------------UGGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 24071 | 0.67 | 0.876673 |
Target: 5'- cGGCGAGCCGaUCGGCcggccgUGGCaCUCGGu -3' miRNA: 3'- -CUGUUCGGCaAGCUGaa----GUUG-GAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 24797 | 0.67 | 0.868481 |
Target: 5'- cGGCAagguggugcAGCCGggCGACcggaUCGugCUCGGg -3' miRNA: 3'- -CUGU---------UCGGCaaGCUGa---AGUugGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 25485 | 0.67 | 0.868481 |
Target: 5'- cGACcGGCCGcgacccuggUCGGCgccgUCcGCCUCGGc -3' miRNA: 3'- -CUGuUCGGCa--------AGCUGa---AGuUGGAGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 29348 | 0.69 | 0.814029 |
Target: 5'- aGCAGaCCG-UCGACUUCGGCCgcaUCGGc -3' miRNA: 3'- cUGUUcGGCaAGCUGAAGUUGG---AGCU- -5' |
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26398 | 3' | -50.2 | NC_005345.2 | + | 30787 | 0.73 | 0.559813 |
Target: 5'- cGGCAAcaCCGUgacCGACUggUCGACCUCGAc -3' miRNA: 3'- -CUGUUc-GGCAa--GCUGA--AGUUGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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