miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26398 3' -50.2 NC_005345.2 + 8579 0.68 0.851303
Target:  5'- --uGAGCCGcUCGACgugaUCcguGCCUCGGu -3'
miRNA:   3'- cugUUCGGCaAGCUGa---AGu--UGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 43678 0.68 0.833126
Target:  5'- ----cGCCGggUGGCUgaUCAGCCUCGc -3'
miRNA:   3'- cuguuCGGCaaGCUGA--AGUUGGAGCu -5'
26398 3' -50.2 NC_005345.2 + 9727 0.68 0.823687
Target:  5'- ----cGCCGgggUCGAgCgggUCGGCCUCGAu -3'
miRNA:   3'- cuguuCGGCa--AGCU-Ga--AGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 29348 0.69 0.814029
Target:  5'- aGCAGaCCG-UCGACUUCGGCCgcaUCGGc -3'
miRNA:   3'- cUGUUcGGCaAGCUGAAGUUGG---AGCU- -5'
26398 3' -50.2 NC_005345.2 + 16942 0.69 0.773438
Target:  5'- cGGCcGGCCGcUCGACgagacGCCUCGGc -3'
miRNA:   3'- -CUGuUCGGCaAGCUGaagu-UGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 19491 0.7 0.762862
Target:  5'- gGACAcGCCG-UCGACggCGACCUUc- -3'
miRNA:   3'- -CUGUuCGGCaAGCUGaaGUUGGAGcu -5'
26398 3' -50.2 NC_005345.2 + 44163 0.7 0.762862
Target:  5'- uGGCGAGCgCGUUCGuccGCaUCGGCCgCGAc -3'
miRNA:   3'- -CUGUUCG-GCAAGC---UGaAGUUGGaGCU- -5'
26398 3' -50.2 NC_005345.2 + 43333 0.7 0.718114
Target:  5'- gGGCGAGCugcugcgCGUaCGGC-UCGACCUCGGg -3'
miRNA:   3'- -CUGUUCG-------GCAaGCUGaAGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 42055 0.73 0.582475
Target:  5'- cGCGGGCCGuUUCGACcgUCGugcacuuccggGCCUCGGc -3'
miRNA:   3'- cUGUUCGGC-AAGCUGa-AGU-----------UGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 21183 0.73 0.571117
Target:  5'- cGACGGcgcaccGCCGUUCGGgUUCAcgcgcuccgccgACCUCGAc -3'
miRNA:   3'- -CUGUU------CGGCAAGCUgAAGU------------UGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 30787 0.73 0.559813
Target:  5'- cGGCAAcaCCGUgacCGACUggUCGACCUCGAc -3'
miRNA:   3'- -CUGUUc-GGCAa--GCUGA--AGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 31975 0.73 0.559813
Target:  5'- cGGCugguacGGCCucggGUUCGACcUCGACCUCGGg -3'
miRNA:   3'- -CUGu-----UCGG----CAAGCUGaAGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 32470 0.76 0.431198
Target:  5'- cGGCGAGCCGgcugacagcgUGACgcgCGGCCUCGAc -3'
miRNA:   3'- -CUGUUCGGCaa--------GCUGaa-GUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 32644 1.1 0.00271
Target:  5'- cGACAAGCCGUUCGACUUCAACCUCGAc -3'
miRNA:   3'- -CUGUUCGGCAAGCUGAAGUUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.