miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26398 5' -58.7 NC_005345.2 + 38131 0.67 0.485813
Target:  5'- cGGCCGGGGUCGucACCU-ACUUCGagaacgucuacUUCGg -3'
miRNA:   3'- -CCGGCUCCAGC--UGGAcUGGGGC-----------AAGC- -5'
26398 5' -58.7 NC_005345.2 + 34245 0.67 0.485813
Target:  5'- cGGCCGcgaacgcGGuccUCGACCUGACCCUuGacCGg -3'
miRNA:   3'- -CCGGCu------CC---AGCUGGACUGGGG-CaaGC- -5'
26398 5' -58.7 NC_005345.2 + 3090 0.67 0.475953
Target:  5'- cGGCCGccuGaUCGACCcucgGGCCCCGgaCa -3'
miRNA:   3'- -CCGGCu--CcAGCUGGa---CUGGGGCaaGc -5'
26398 5' -58.7 NC_005345.2 + 26385 0.67 0.475953
Target:  5'- -cCCGAGGU-GACCgaGugCCCGaUCGa -3'
miRNA:   3'- ccGGCUCCAgCUGGa-CugGGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 14991 0.67 0.466194
Target:  5'- cGGCCGAGGacucggauccgUCGACU--GCCCgGaUCGa -3'
miRNA:   3'- -CCGGCUCC-----------AGCUGGacUGGGgCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 1446 0.67 0.466194
Target:  5'- cGGCaCGGGGUCGucguACCgGAUgCCG-UCGg -3'
miRNA:   3'- -CCG-GCUCCAGC----UGGaCUGgGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 36832 0.67 0.456539
Target:  5'- uGGCCGGcGGUgcaGGCCgGACCCUGg-CGg -3'
miRNA:   3'- -CCGGCU-CCAg--CUGGaCUGGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 15978 0.68 0.446993
Target:  5'- cGCCGAGGUCGuCCguACCuCUGUgggCGa -3'
miRNA:   3'- cCGGCUCCAGCuGGacUGG-GGCAa--GC- -5'
26398 5' -58.7 NC_005345.2 + 18352 0.68 0.444151
Target:  5'- gGGUCGAGGUCGACCaGucggucacgguguuGCCguaCCGgUCGg -3'
miRNA:   3'- -CCGGCUCCAGCUGGaC--------------UGG---GGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 19167 0.68 0.441319
Target:  5'- cGGCCGAGGacgccgacgagccccUCGAcgacgagcCCgacGGCCCCGacgUCGa -3'
miRNA:   3'- -CCGGCUCC---------------AGCU--------GGa--CUGGGGCa--AGC- -5'
26398 5' -58.7 NC_005345.2 + 4315 0.68 0.437559
Target:  5'- -uCCGAGGUCGACCUGcguCUCGacaUCGg -3'
miRNA:   3'- ccGGCUCCAGCUGGACug-GGGCa--AGC- -5'
26398 5' -58.7 NC_005345.2 + 34162 0.68 0.42824
Target:  5'- cGGCCccGAGGagUGGCCcggGGCCCCGacCGa -3'
miRNA:   3'- -CCGG--CUCCa-GCUGGa--CUGGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 5533 0.68 0.42824
Target:  5'- cGCCGGGGggccCGACCUGAUCagCGUgaCGa -3'
miRNA:   3'- cCGGCUCCa---GCUGGACUGGg-GCAa-GC- -5'
26398 5' -58.7 NC_005345.2 + 8181 0.68 0.419039
Target:  5'- cGCCGAGGUCGAUCgcgaaaGACgCCGc--- -3'
miRNA:   3'- cCGGCUCCAGCUGGa-----CUGgGGCaagc -5'
26398 5' -58.7 NC_005345.2 + 9727 0.68 0.419039
Target:  5'- cGCCGGGGUCGAgCgggucGGCCUCGa--- -3'
miRNA:   3'- cCGGCUCCAGCUgGa----CUGGGGCaagc -5'
26398 5' -58.7 NC_005345.2 + 47693 0.68 0.419039
Target:  5'- cGGCCGAcggcauccGGUaCGAC--GACCCCGUgccgUCGg -3'
miRNA:   3'- -CCGGCU--------CCA-GCUGgaCUGGGGCA----AGC- -5'
26398 5' -58.7 NC_005345.2 + 39530 0.68 0.418126
Target:  5'- cGGCCGAucgagcaGGUCGugCaccGGCCCCGcggcCGg -3'
miRNA:   3'- -CCGGCU-------CCAGCugGa--CUGGGGCaa--GC- -5'
26398 5' -58.7 NC_005345.2 + 29308 0.69 0.391297
Target:  5'- cGGCCGGGaugccuggaagcuGUCGGCC--GCCCCGggugUCa -3'
miRNA:   3'- -CCGGCUC-------------CAGCUGGacUGGGGCa---AGc -5'
26398 5' -58.7 NC_005345.2 + 9975 0.69 0.38347
Target:  5'- gGGCUGGGGUCcGCCUcGACCaCGUgaaagCGa -3'
miRNA:   3'- -CCGGCUCCAGcUGGA-CUGGgGCAa----GC- -5'
26398 5' -58.7 NC_005345.2 + 14904 0.69 0.38347
Target:  5'- aGGUCGAGGaccgcguucgCGGCCgUGccGCCCCGggCGa -3'
miRNA:   3'- -CCGGCUCCa---------GCUGG-AC--UGGGGCaaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.