miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26399 3' -55.2 NC_005345.2 + 33204 0.66 0.700075
Target:  5'- --gGCAGcGUGCUCAGCAcgGUGUCgCa -3'
miRNA:   3'- ggaCGUC-CGCGAGUUGUagUACGGgG- -5'
26399 3' -55.2 NC_005345.2 + 15702 0.66 0.700075
Target:  5'- gCUGCAGGUcCUCGGCGa-AU-CCCCg -3'
miRNA:   3'- gGACGUCCGcGAGUUGUagUAcGGGG- -5'
26399 3' -55.2 NC_005345.2 + 1992 0.66 0.700075
Target:  5'- gCCgcagGC-GGCGCUC-ACAgc--GCCCCc -3'
miRNA:   3'- -GGa---CGuCCGCGAGuUGUaguaCGGGG- -5'
26399 3' -55.2 NC_005345.2 + 8847 0.66 0.696794
Target:  5'- gCUGCggcacggugaacggGGGCGCggCAugAcgcucuccggacUCAUGCCCg -3'
miRNA:   3'- gGACG--------------UCCGCGa-GUugU------------AGUACGGGg -5'
26399 3' -55.2 NC_005345.2 + 35504 0.66 0.689117
Target:  5'- gCUGCucgucGGCGCUCAcgccgcgcCGUCcgGUUCCu -3'
miRNA:   3'- gGACGu----CCGCGAGUu-------GUAGuaCGGGG- -5'
26399 3' -55.2 NC_005345.2 + 28030 0.66 0.689117
Target:  5'- --cGCAGGC-CUCGACGUCGUcgaGCUUUc -3'
miRNA:   3'- ggaCGUCCGcGAGUUGUAGUA---CGGGG- -5'
26399 3' -55.2 NC_005345.2 + 31697 0.66 0.676998
Target:  5'- cCCguuggGCGuucaCGCUCGACAUCAccaugagaggacaUGCCCUa -3'
miRNA:   3'- -GGa----CGUcc--GCGAGUUGUAGU-------------ACGGGG- -5'
26399 3' -55.2 NC_005345.2 + 17819 0.66 0.673683
Target:  5'- cCCUGCcGGCGUgccccuucccgccCGGCcgCcggGCCCCg -3'
miRNA:   3'- -GGACGuCCGCGa------------GUUGuaGua-CGGGG- -5'
26399 3' -55.2 NC_005345.2 + 46432 0.66 0.667043
Target:  5'- gCCggGCGGGCGggaGACAUCGgcGCCgCCg -3'
miRNA:   3'- -GGa-CGUCCGCgagUUGUAGUa-CGG-GG- -5'
26399 3' -55.2 NC_005345.2 + 6987 0.66 0.667043
Target:  5'- gCUGCuggccGGGCGC-CGACAggcagCGUcGCCaCCg -3'
miRNA:   3'- gGACG-----UCCGCGaGUUGUa----GUA-CGG-GG- -5'
26399 3' -55.2 NC_005345.2 + 22010 0.66 0.667043
Target:  5'- gCCU-CGGGCaGCUCGACGccggCcgGUGCCgCCg -3'
miRNA:   3'- -GGAcGUCCG-CGAGUUGUa---G--UACGG-GG- -5'
26399 3' -55.2 NC_005345.2 + 47036 0.66 0.667043
Target:  5'- aCUGC-GGCGCcgucUCGACGaCGcUGaCCCCg -3'
miRNA:   3'- gGACGuCCGCG----AGUUGUaGU-AC-GGGG- -5'
26399 3' -55.2 NC_005345.2 + 2014 0.66 0.66261
Target:  5'- --aGCAGGCGUuccUCGGCGUCcucgucgagcggGCCCg -3'
miRNA:   3'- ggaCGUCCGCG---AGUUGUAGua----------CGGGg -5'
26399 3' -55.2 NC_005345.2 + 33945 0.66 0.65595
Target:  5'- --aGCAGGCGUUCGACcugAUCA--CCCg -3'
miRNA:   3'- ggaCGUCCGCGAGUUG---UAGUacGGGg -5'
26399 3' -55.2 NC_005345.2 + 36488 0.66 0.65595
Target:  5'- gCCgUGgGGGCGCaguUCAGCca-GUGCgCCCg -3'
miRNA:   3'- -GG-ACgUCCGCG---AGUUGuagUACG-GGG- -5'
26399 3' -55.2 NC_005345.2 + 15143 0.66 0.65484
Target:  5'- uCCUGCGGGUcgggcggGUUCAcgaccACGaugggguugcUCAUGgCCCCa -3'
miRNA:   3'- -GGACGUCCG-------CGAGU-----UGU----------AGUAC-GGGG- -5'
26399 3' -55.2 NC_005345.2 + 20750 0.66 0.65484
Target:  5'- cCCUGCcuGcCGCUgccgccgCGGCGgcgCGUGCCCUg -3'
miRNA:   3'- -GGACGucC-GCGA-------GUUGUa--GUACGGGG- -5'
26399 3' -55.2 NC_005345.2 + 7945 0.67 0.633709
Target:  5'- aCCggauCGGGuCGCUCGcGCA-CAUGCCCa -3'
miRNA:   3'- -GGac--GUCC-GCGAGU-UGUaGUACGGGg -5'
26399 3' -55.2 NC_005345.2 + 23100 0.67 0.63037
Target:  5'- --aGCAGGCGCUCGccgagGCGagcgaggcggcgagUCGggucUGUCCCg -3'
miRNA:   3'- ggaCGUCCGCGAGU-----UGU--------------AGU----ACGGGG- -5'
26399 3' -55.2 NC_005345.2 + 34788 0.67 0.62258
Target:  5'- uCgUGCAGGggcUGCUCAACGcCGUGaugacggcgaaCCCCa -3'
miRNA:   3'- -GgACGUCC---GCGAGUUGUaGUAC-----------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.