miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26399 5' -64.1 NC_005345.2 + 11489 0.65 0.31109
Target:  5'- gGCcGCGCAG-GCGGCccgcaccGACGCCGgacuGCa -3'
miRNA:   3'- -CGcCGCGUCuCGCCG-------CUGCGGCgc--CG- -5'
26399 5' -64.1 NC_005345.2 + 15799 0.66 0.304609
Target:  5'- cCGGUGUGG-GCGGCacgccggcuACGCCGCGaccGCg -3'
miRNA:   3'- cGCCGCGUCuCGCCGc--------UGCGGCGC---CG- -5'
26399 5' -64.1 NC_005345.2 + 10677 0.66 0.304609
Target:  5'- cGCGGCGCGGgaAGUGcccGCGcugUGCC-CGGCc -3'
miRNA:   3'- -CGCCGCGUC--UCGC---CGCu--GCGGcGCCG- -5'
26399 5' -64.1 NC_005345.2 + 21425 0.66 0.304609
Target:  5'- uUGGCGCGaGGcCGGCcGCGuCUGCGGa -3'
miRNA:   3'- cGCCGCGUcUC-GCCGcUGC-GGCGCCg -5'
26399 5' -64.1 NC_005345.2 + 6643 0.66 0.304609
Target:  5'- aGCcGCGCGGAGagGGCacgGGCGaaCGUGGCg -3'
miRNA:   3'- -CGcCGCGUCUCg-CCG---CUGCg-GCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 25702 0.66 0.302472
Target:  5'- uCGGCGUgaccgguccGGA-CGGCGaacccgacacccggGCGUCGCGGUg -3'
miRNA:   3'- cGCCGCG---------UCUcGCCGC--------------UGCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 9159 0.66 0.302472
Target:  5'- aCGGCGCGGGugcacgggccggucGUGuGCGAgcugaucgaCGCCGgGGUg -3'
miRNA:   3'- cGCCGCGUCU--------------CGC-CGCU---------GCGGCgCCG- -5'
26399 5' -64.1 NC_005345.2 + 8412 0.66 0.297531
Target:  5'- cCGGuCGaCGGGgcGCGGCugGACGCCgaGCGGUc -3'
miRNA:   3'- cGCC-GC-GUCU--CGCCG--CUGCGG--CGCCG- -5'
26399 5' -64.1 NC_005345.2 + 11333 0.66 0.297531
Target:  5'- gGCGaGCGCcgcgagcaguGAGCGGCacCGCCaaCGGCa -3'
miRNA:   3'- -CGC-CGCGu---------CUCGCCGcuGCGGc-GCCG- -5'
26399 5' -64.1 NC_005345.2 + 12692 0.66 0.297531
Target:  5'- aCGGCG-AGAGUGGCGGUGgUG-GGCg -3'
miRNA:   3'- cGCCGCgUCUCGCCGCUGCgGCgCCG- -5'
26399 5' -64.1 NC_005345.2 + 36257 0.66 0.297531
Target:  5'- cCGGaugaaccaGgAGAGCGGCGGCaacccgGCCGCGa- -3'
miRNA:   3'- cGCCg-------CgUCUCGCCGCUG------CGGCGCcg -5'
26399 5' -64.1 NC_005345.2 + 3524 0.66 0.297531
Target:  5'- aGCGaacuGCGUucGGCGGUGACGCUGUGa- -3'
miRNA:   3'- -CGC----CGCGucUCGCCGCUGCGGCGCcg -5'
26399 5' -64.1 NC_005345.2 + 23357 0.66 0.297531
Target:  5'- uGCuGCGCugGGAGCGGgccgaGGCGCC-CGaGCu -3'
miRNA:   3'- -CGcCGCG--UCUCGCCg----CUGCGGcGC-CG- -5'
26399 5' -64.1 NC_005345.2 + 45885 0.66 0.297531
Target:  5'- aGCuGCGCAcGGGguaccuCGGCacgaGCGCCGCGuGCa -3'
miRNA:   3'- -CGcCGCGU-CUC------GCCGc---UGCGGCGC-CG- -5'
26399 5' -64.1 NC_005345.2 + 33874 0.66 0.297531
Target:  5'- uCGGCGUcGAcGUgGGgGACGCCGCucgcgcggccgGGCa -3'
miRNA:   3'- cGCCGCGuCU-CG-CCgCUGCGGCG-----------CCG- -5'
26399 5' -64.1 NC_005345.2 + 1609 0.66 0.29683
Target:  5'- uGCGGuCGCGuu-CGGUGAUgaggucgGUCGCGGCg -3'
miRNA:   3'- -CGCC-GCGUcucGCCGCUG-------CGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 29819 0.66 0.29058
Target:  5'- cCGGCgaGCAGccCGGCauCGUCGCGGCc -3'
miRNA:   3'- cGCCG--CGUCucGCCGcuGCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 32118 0.66 0.29058
Target:  5'- --cGCGUGGGGCGGCGugcucguuCGCa-CGGCg -3'
miRNA:   3'- cgcCGCGUCUCGCCGCu-------GCGgcGCCG- -5'
26399 5' -64.1 NC_005345.2 + 45551 0.66 0.29058
Target:  5'- -gGGCGac-AGCGGcCGAgGUCGgGGCg -3'
miRNA:   3'- cgCCGCgucUCGCC-GCUgCGGCgCCG- -5'
26399 5' -64.1 NC_005345.2 + 20074 0.66 0.29058
Target:  5'- aGCGGUagcucGCGGucuCGGCGAgccCGCCGCcGCc -3'
miRNA:   3'- -CGCCG-----CGUCuc-GCCGCU---GCGGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.