miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26399 5' -64.1 NC_005345.2 + 11489 0.65 0.31109
Target:  5'- gGCcGCGCAG-GCGGCccgcaccGACGCCGgacuGCa -3'
miRNA:   3'- -CGcCGCGUCuCGCCG-------CUGCGGCgc--CG- -5'
26399 5' -64.1 NC_005345.2 + 15799 0.66 0.304609
Target:  5'- cCGGUGUGG-GCGGCacgccggcuACGCCGCGaccGCg -3'
miRNA:   3'- cGCCGCGUCuCGCCGc--------UGCGGCGC---CG- -5'
26399 5' -64.1 NC_005345.2 + 31469 0.66 0.269844
Target:  5'- cGCGGUucguacggaucgaGCGGAuCGGCGGCcCCGCGa- -3'
miRNA:   3'- -CGCCG-------------CGUCUcGCCGCUGcGGCGCcg -5'
26399 5' -64.1 NC_005345.2 + 31877 0.66 0.277063
Target:  5'- cCGcGCGCAGAccaggaccGCGGCGcCuGCCGCccGGUc -3'
miRNA:   3'- cGC-CGCGUCU--------CGCCGCuG-CGGCG--CCG- -5'
26399 5' -64.1 NC_005345.2 + 42134 0.66 0.270494
Target:  5'- aGgGGacCGCAcucacGGUGGCGACGCUGCcugucGGCg -3'
miRNA:   3'- -CgCC--GCGUc----UCGCCGCUGCGGCG-----CCG- -5'
26399 5' -64.1 NC_005345.2 + 48411 0.66 0.270494
Target:  5'- aGCacCGC-GAGCGGC-ACGUCGaCGGCg -3'
miRNA:   3'- -CGccGCGuCUCGCCGcUGCGGC-GCCG- -5'
26399 5' -64.1 NC_005345.2 + 26614 0.66 0.270494
Target:  5'- uGCGGCGCAGGcCGGUG-UGCCcgaGGa -3'
miRNA:   3'- -CGCCGCGUCUcGCCGCuGCGGcg-CCg -5'
26399 5' -64.1 NC_005345.2 + 26977 0.66 0.275079
Target:  5'- cGCGGCGUucgacgggcugucgAGccuGCGG-GACGCggaCGCGGUc -3'
miRNA:   3'- -CGCCGCG--------------UCu--CGCCgCUGCG---GCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 8737 0.66 0.2764
Target:  5'- gGCGGCGauccguaCGGAcGCGuCGGCGgUGUGGCu -3'
miRNA:   3'- -CGCCGC-------GUCU-CGCcGCUGCgGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 5468 0.66 0.268548
Target:  5'- cGCGGCGaGGcugaucagccacccGGCGGCGGCagGCaCGaCGGUg -3'
miRNA:   3'- -CGCCGCgUC--------------UCGCCGCUG--CG-GC-GCCG- -5'
26399 5' -64.1 NC_005345.2 + 27206 0.66 0.270494
Target:  5'- uCGGCaGCGGGuCGGCGcaGCGCuCGCaGGUg -3'
miRNA:   3'- cGCCG-CGUCUcGCCGC--UGCG-GCG-CCG- -5'
26399 5' -64.1 NC_005345.2 + 43853 0.66 0.270494
Target:  5'- cCGGuCGaCGGGGCgucGGCcggGACuCCGCGGCg -3'
miRNA:   3'- cGCC-GC-GUCUCG---CCG---CUGcGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 6643 0.66 0.304609
Target:  5'- aGCcGCGCGGAGagGGCacgGGCGaaCGUGGCg -3'
miRNA:   3'- -CGcCGCGUCUCg-CCG---CUGCg-GCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 1609 0.66 0.29683
Target:  5'- uGCGGuCGCGuu-CGGUGAUgaggucgGUCGCGGCg -3'
miRNA:   3'- -CGCC-GCGUcucGCCGCUG-------CGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 45551 0.66 0.29058
Target:  5'- -gGGCGac-AGCGGcCGAgGUCGgGGCg -3'
miRNA:   3'- cgCCGCgucUCGCC-GCUgCGGCgCCG- -5'
26399 5' -64.1 NC_005345.2 + 38271 0.66 0.29058
Target:  5'- uGCgGGUGCGG-GCacgGGaCG-CGCCGCGuGCg -3'
miRNA:   3'- -CG-CCGCGUCuCG---CC-GCuGCGGCGC-CG- -5'
26399 5' -64.1 NC_005345.2 + 20074 0.66 0.29058
Target:  5'- aGCGGUagcucGCGGucuCGGCGAgccCGCCGCcGCc -3'
miRNA:   3'- -CGCCG-----CGUCuc-GCCGCU---GCGGCGcCG- -5'
26399 5' -64.1 NC_005345.2 + 4274 0.66 0.283758
Target:  5'- gGCGGUGCGGgcAGCucgGGCucGgGCUGCGGUu -3'
miRNA:   3'- -CGCCGCGUC--UCG---CCGc-UgCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 48895 0.66 0.283758
Target:  5'- gGCGGCGaggugcGGGCGGCGAUGgcucccgagaCCGagGGUg -3'
miRNA:   3'- -CGCCGCgu----CUCGCCGCUGC----------GGCg-CCG- -5'
26399 5' -64.1 NC_005345.2 + 40063 0.66 0.277063
Target:  5'- uGCGG-GCGGucGcCGGCGACG--GCGGCc -3'
miRNA:   3'- -CGCCgCGUCu-C-GCCGCUGCggCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.