miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26399 5' -64.1 NC_005345.2 + 32776 1.12 0.00008
Target:  5'- gGCGGCGCAGAGCGGCGACGCCGCGGCg -3'
miRNA:   3'- -CGCCGCGUCUCGCCGCUGCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 34390 0.75 0.06269
Target:  5'- gGCGgucuccGCGCuGGGCaaggugGGCGGCGCCGCGGa -3'
miRNA:   3'- -CGC------CGCGuCUCG------CCGCUGCGGCGCCg -5'
26399 5' -64.1 NC_005345.2 + 7362 0.75 0.066214
Target:  5'- gGUGGCGCAGccgGGCgGGgGugGCCGCugauguGGCa -3'
miRNA:   3'- -CGCCGCGUC---UCG-CCgCugCGGCG------CCG- -5'
26399 5' -64.1 NC_005345.2 + 11489 0.65 0.31109
Target:  5'- gGCcGCGCAG-GCGGCccgcaccGACGCCGgacuGCa -3'
miRNA:   3'- -CGcCGCGUCuCGCCG-------CUGCGGCgc--CG- -5'
26399 5' -64.1 NC_005345.2 + 16350 0.8 0.025144
Target:  5'- uCGGCgGCAucGCGGcCGGCGCCGCGGUg -3'
miRNA:   3'- cGCCG-CGUcuCGCC-GCUGCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 28361 0.8 0.027646
Target:  5'- uCGGCGCcgacAGGGCGGCGgauaccagggcacgcGcCGCCGCGGCg -3'
miRNA:   3'- cGCCGCG----UCUCGCCGC---------------U-GCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 26771 0.79 0.032311
Target:  5'- cCGGCGCGGGuGCGGCGgaucguggccgGCGCCGCGucGCa -3'
miRNA:   3'- cGCCGCGUCU-CGCCGC-----------UGCGGCGC--CG- -5'
26399 5' -64.1 NC_005345.2 + 46335 0.78 0.03611
Target:  5'- cGCGGCGCuGGAGCaGGCGaucgaGCGCaCGcCGGCg -3'
miRNA:   3'- -CGCCGCG-UCUCG-CCGC-----UGCG-GC-GCCG- -5'
26399 5' -64.1 NC_005345.2 + 23746 0.78 0.041478
Target:  5'- aGCGG-GCAGAGCuagcaagggGGCGucAUGCCGUGGCg -3'
miRNA:   3'- -CGCCgCGUCUCG---------CCGC--UGCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 35740 0.76 0.056178
Target:  5'- cGCGGCgGCcgaacGAGCGGCGGCaucCCGgGGCa -3'
miRNA:   3'- -CGCCG-CGu----CUCGCCGCUGc--GGCgCCG- -5'
26399 5' -64.1 NC_005345.2 + 4190 0.77 0.047624
Target:  5'- gGCGGCaggccgugcagGCGGcGCGGCaGAUGCUGCGGUa -3'
miRNA:   3'- -CGCCG-----------CGUCuCGCCG-CUGCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 34756 0.78 0.039243
Target:  5'- cGCGGCGgc-GGCGGUGACGC-GCGGCu -3'
miRNA:   3'- -CGCCGCgucUCGCCGCUGCGgCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 14923 0.88 0.005936
Target:  5'- cGCGGCGCGGcggcugcagcgggcGGCGGCGaaggaucGCGCCGCGGCu -3'
miRNA:   3'- -CGCCGCGUC--------------UCGCCGC-------UGCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 27531 0.76 0.053173
Target:  5'- -aGGCGCAc-GCGGCGAUcacCCGCGGCa -3'
miRNA:   3'- cgCCGCGUcuCGCCGCUGc--GGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 2048 0.81 0.020676
Target:  5'- cCGGCGCGGccCGGCGG-GCCGCGGCg -3'
miRNA:   3'- cGCCGCGUCucGCCGCUgCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 29739 0.78 0.03611
Target:  5'- cGCGGCGCAGccgaccgagcucGGC-GCGACGCUGCucGGCa -3'
miRNA:   3'- -CGCCGCGUC------------UCGcCGCUGCGGCG--CCG- -5'
26399 5' -64.1 NC_005345.2 + 30129 0.76 0.056178
Target:  5'- aCGGCuCGG-GCGGCGACGUCGaGGCg -3'
miRNA:   3'- cGCCGcGUCuCGCCGCUGCGGCgCCG- -5'
26399 5' -64.1 NC_005345.2 + 31259 0.75 0.06269
Target:  5'- cGCGGCGCcguGAuCGGCGAcuaCGCCaCGGCg -3'
miRNA:   3'- -CGCCGCGu--CUcGCCGCU---GCGGcGCCG- -5'
26399 5' -64.1 NC_005345.2 + 33523 0.8 0.024451
Target:  5'- cCGG-GCAG-GCGGCGA-GCCGCGGCa -3'
miRNA:   3'- cGCCgCGUCuCGCCGCUgCGGCGCCG- -5'
26399 5' -64.1 NC_005345.2 + 4146 0.79 0.031425
Target:  5'- cGCGGCGCucgucGAGCGGguguCGACGCgGCaGGCg -3'
miRNA:   3'- -CGCCGCGu----CUCGCC----GCUGCGgCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.