miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
264 5' -59.1 AC_000008.1 + 5415 0.66 0.409013
Target:  5'- uCUUCGCCcUGCGCGucGGcCAGGUa- -3'
miRNA:   3'- -GGGGUGGuACGCGCuuCCuGUCCGga -5'
264 5' -59.1 AC_000008.1 + 8507 0.66 0.382463
Target:  5'- uCCCCGCgGcgcgacuacgguaccGCGCGgcGGGCgguGGGCCg -3'
miRNA:   3'- -GGGGUGgUa--------------CGCGCuuCCUG---UCCGGa -5'
264 5' -59.1 AC_000008.1 + 27731 0.66 0.372697
Target:  5'- uUCCCACUcugcuuccuuGUGCGCGGucGuCAGGUCa -3'
miRNA:   3'- -GGGGUGG----------UACGCGCUucCuGUCCGGa -5'
264 5' -59.1 AC_000008.1 + 2461 0.67 0.355379
Target:  5'- uCCCCGCCAUGaGCuuuGGAuaCAGcGCCUu -3'
miRNA:   3'- -GGGGUGGUACgCGcuuCCU--GUC-CGGA- -5'
264 5' -59.1 AC_000008.1 + 17547 0.67 0.330482
Target:  5'- gCCCCGauuuCCGUGCGCaggguggcucgcGAAGGagGCAGGaCCc -3'
miRNA:   3'- -GGGGU----GGUACGCG------------CUUCC--UGUCC-GGa -5'
264 5' -59.1 AC_000008.1 + 8737 0.67 0.322473
Target:  5'- --gCGCCucUGCGUGAAGacGACGGGCCc -3'
miRNA:   3'- gggGUGGu-ACGCGCUUC--CUGUCCGGa -5'
264 5' -59.1 AC_000008.1 + 26866 0.68 0.306894
Target:  5'- gCCCGCgAUGC-CGAagGGGGCGuGGUCUa -3'
miRNA:   3'- gGGGUGgUACGcGCU--UCCUGU-CCGGA- -5'
264 5' -59.1 AC_000008.1 + 29373 0.68 0.299322
Target:  5'- cCCCUACCGccauucUGCucGCGcAAGGGC-GGCCg -3'
miRNA:   3'- -GGGGUGGU------ACG--CGC-UUCCUGuCCGGa -5'
264 5' -59.1 AC_000008.1 + 26491 0.68 0.277478
Target:  5'- cCCCCACCGc-CGCcagaagaagaaGAAGGGgAGGCCc -3'
miRNA:   3'- -GGGGUGGUacGCG-----------CUUCCUgUCCGGa -5'
264 5' -59.1 AC_000008.1 + 17648 0.7 0.231479
Target:  5'- aCCCCGCUaAUGC-CaGAGGcCAGGCCa -3'
miRNA:   3'- -GGGGUGG-UACGcGcUUCCuGUCCGGa -5'
264 5' -59.1 AC_000008.1 + 19436 0.7 0.224864
Target:  5'- uUCUugCAaucuaguUGCGCGggGGGCGGGUg- -3'
miRNA:   3'- gGGGugGU-------ACGCGCuuCCUGUCCGga -5'
264 5' -59.1 AC_000008.1 + 12755 0.7 0.219571
Target:  5'- gCCCGCCAacgUGcCGCG-GGGACAGGaggaCUa -3'
miRNA:   3'- gGGGUGGU---AC-GCGCuUCCUGUCCg---GA- -5'
264 5' -59.1 AC_000008.1 + 19968 0.7 0.21899
Target:  5'- gCCCCGCCAaacaucuUGCuuGgGAAGcGCAGGCCc -3'
miRNA:   3'- -GGGGUGGU-------ACG--CgCUUCcUGUCCGGa -5'
264 5' -59.1 AC_000008.1 + 17405 0.71 0.170425
Target:  5'- aCUCCgguaGCCAUggGCGCGAugggacgggugguGGGCAGGCCUu -3'
miRNA:   3'- -GGGG----UGGUA--CGCGCUu------------CCUGUCCGGA- -5'
264 5' -59.1 AC_000008.1 + 21318 1.09 0.000217
Target:  5'- cCCCCACCAUGCGCGAAGGACAGGCCUa -3'
miRNA:   3'- -GGGGUGGUACGCGCUUCCUGUCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.