miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2640 5' -57.5 NC_001491.2 + 8852 0.66 0.828962
Target:  5'- aGUGCUG-GCAGUCCcUCCug-CAGCu -3'
miRNA:   3'- aCACGAUaCGUCGGGcGGGugaGUCG- -5'
2640 5' -57.5 NC_001491.2 + 115695 0.66 0.823865
Target:  5'- gGUGUUGUGCuGGCCUGgauggucuCCCagguguuacuggcguGCUCGGCc -3'
miRNA:   3'- aCACGAUACG-UCGGGC--------GGG---------------UGAGUCG- -5'
2640 5' -57.5 NC_001491.2 + 132178 0.66 0.820431
Target:  5'- --cGCgcaggGCGGCUaCGCCCACacCAGCu -3'
miRNA:   3'- acaCGaua--CGUCGG-GCGGGUGa-GUCG- -5'
2640 5' -57.5 NC_001491.2 + 79202 0.66 0.811728
Target:  5'- gGUGCgc-GCGGCCCGCuCCAgggaggaGGCc -3'
miRNA:   3'- aCACGauaCGUCGGGCG-GGUgag----UCG- -5'
2640 5' -57.5 NC_001491.2 + 111047 0.66 0.793837
Target:  5'- gUGUGCgccucagAUaGCAGCgCUGCCCACgccccCAGa -3'
miRNA:   3'- -ACACGa------UA-CGUCG-GGCGGGUGa----GUCg -5'
2640 5' -57.5 NC_001491.2 + 34796 0.66 0.793837
Target:  5'- --aGCUG-GCGGCCagcgGCCCGCUgAGa -3'
miRNA:   3'- acaCGAUaCGUCGGg---CGGGUGAgUCg -5'
2640 5' -57.5 NC_001491.2 + 39171 0.67 0.74669
Target:  5'- -aUGUUAgcgGCAGCCUGaauaCCACcgaUCAGCc -3'
miRNA:   3'- acACGAUa--CGUCGGGCg---GGUG---AGUCG- -5'
2640 5' -57.5 NC_001491.2 + 136878 0.68 0.727057
Target:  5'- aGUGCggacGCGGCaUCGCUCGCgugugCGGCa -3'
miRNA:   3'- aCACGaua-CGUCG-GGCGGGUGa----GUCG- -5'
2640 5' -57.5 NC_001491.2 + 27220 0.68 0.717111
Target:  5'- cGUGCUGgucggGUauAGCCCGUCCGCgcccGCc -3'
miRNA:   3'- aCACGAUa----CG--UCGGGCGGGUGagu-CG- -5'
2640 5' -57.5 NC_001491.2 + 27103 0.68 0.686873
Target:  5'- --cGCgg-GCGGCCCgGCgCCGCUCcggAGCg -3'
miRNA:   3'- acaCGauaCGUCGGG-CG-GGUGAG---UCG- -5'
2640 5' -57.5 NC_001491.2 + 62578 0.68 0.685856
Target:  5'- -cUGCUguccGUGCGGCCCaaucCCCACaaccaagUCGGCg -3'
miRNA:   3'- acACGA----UACGUCGGGc---GGGUG-------AGUCG- -5'
2640 5' -57.5 NC_001491.2 + 132911 0.69 0.635675
Target:  5'- --aGCUGUGCgcaAGCCaCGugaaCCCACUgCAGCg -3'
miRNA:   3'- acaCGAUACG---UCGG-GC----GGGUGA-GUCG- -5'
2640 5' -57.5 NC_001491.2 + 26931 0.69 0.625394
Target:  5'- --aGC-AUGCGG-CCGCUgACUCGGCg -3'
miRNA:   3'- acaCGaUACGUCgGGCGGgUGAGUCG- -5'
2640 5' -57.5 NC_001491.2 + 10193 0.71 0.530992
Target:  5'- gGUcGCUAcGCGGCCaGCCCcaugcccgucuuccACUCGGCg -3'
miRNA:   3'- aCA-CGAUaCGUCGGgCGGG--------------UGAGUCG- -5'
2640 5' -57.5 NC_001491.2 + 81335 0.72 0.474724
Target:  5'- --aGCUGguUGCGGCCCGCcauagagCCGCcgCAGCg -3'
miRNA:   3'- acaCGAU--ACGUCGGGCG-------GGUGa-GUCG- -5'
2640 5' -57.5 NC_001491.2 + 2411 0.72 0.456939
Target:  5'- gGUGCauccagGCGGCCCuCCguCUCAGCg -3'
miRNA:   3'- aCACGaua---CGUCGGGcGGguGAGUCG- -5'
2640 5' -57.5 NC_001491.2 + 117990 0.74 0.394709
Target:  5'- gUGUGCaagagGguGCCCGCaCCaacaACUCGGCg -3'
miRNA:   3'- -ACACGaua--CguCGGGCG-GG----UGAGUCG- -5'
2640 5' -57.5 NC_001491.2 + 129511 1.1 0.00134
Target:  5'- gUGUGCUAUGCAGCCCGCCCACUCAGCc -3'
miRNA:   3'- -ACACGAUACGUCGGGCGGGUGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.