miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 3' -55.9 NC_005345.2 + 39476 0.66 0.63611
Target:  5'- cUGcAGCCggCGGCGCuCGCGgUACGUCaGCc -3'
miRNA:   3'- uAC-UUGGa-GCUGCG-GCGC-GUGUAG-CG- -5'
26400 3' -55.9 NC_005345.2 + 15486 0.66 0.63611
Target:  5'- -cGAGCC-CGA-GCUGCGCcgcaagucggGCGUUGCu -3'
miRNA:   3'- uaCUUGGaGCUgCGGCGCG----------UGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 31290 0.66 0.635002
Target:  5'- -cGGACCcCGAggauuccCGCCGgGCGCugcugCGCg -3'
miRNA:   3'- uaCUUGGaGCU-------GCGGCgCGUGua---GCG- -5'
26400 3' -55.9 NC_005345.2 + 8973 0.66 0.625036
Target:  5'- --cGGCCUCGAUcgcaGCUGCGCGCcguacaCGCu -3'
miRNA:   3'- uacUUGGAGCUG----CGGCGCGUGua----GCG- -5'
26400 3' -55.9 NC_005345.2 + 37603 0.66 0.625036
Target:  5'- gAUGAACUUCGcggucgUGCUGCGCA-GUUGCu -3'
miRNA:   3'- -UACUUGGAGCu-----GCGGCGCGUgUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 31642 0.66 0.625036
Target:  5'- aGUGGGCCg-GACGCUGCG-AguUCGUg -3'
miRNA:   3'- -UACUUGGagCUGCGGCGCgUguAGCG- -5'
26400 3' -55.9 NC_005345.2 + 18664 0.66 0.625036
Target:  5'- cAUGAcccggcgcaccACCgCGACGCagauCGCGCGCAgCGUg -3'
miRNA:   3'- -UACU-----------UGGaGCUGCG----GCGCGUGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 18765 0.66 0.625036
Target:  5'- -cGAgguacGCCUCGAC-CUGCGCcCGcCGCg -3'
miRNA:   3'- uaCU-----UGGAGCUGcGGCGCGuGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 30238 0.66 0.625036
Target:  5'- gGUGAGCCggUCGACGaCgGUGCGgGUCcgGCc -3'
miRNA:   3'- -UACUUGG--AGCUGC-GgCGCGUgUAG--CG- -5'
26400 3' -55.9 NC_005345.2 + 10008 0.66 0.613969
Target:  5'- -aGAGCCUCGcCGCgGCcgauuucaacuGCGCAU-GCg -3'
miRNA:   3'- uaCUUGGAGCuGCGgCG-----------CGUGUAgCG- -5'
26400 3' -55.9 NC_005345.2 + 28552 0.66 0.613969
Target:  5'- cGUGG--CUCGGCuCCGCGCACGgaaccgaCGCg -3'
miRNA:   3'- -UACUugGAGCUGcGGCGCGUGUa------GCG- -5'
26400 3' -55.9 NC_005345.2 + 13633 0.66 0.613969
Target:  5'- -gGAACCggaCGGCGCgGCGUgagcgccgacgaGCAgCGCg -3'
miRNA:   3'- uaCUUGGa--GCUGCGgCGCG------------UGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 11881 0.66 0.613969
Target:  5'- cGUGccCCUCGACGacgacgcgaCCGcCGC-CGUCGCc -3'
miRNA:   3'- -UACuuGGAGCUGC---------GGC-GCGuGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 21191 0.66 0.613969
Target:  5'- --cGGCCUUGugGUCGgGCuugucguCGUCGCc -3'
miRNA:   3'- uacUUGGAGCugCGGCgCGu------GUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 18415 0.66 0.613969
Target:  5'- --cGACCUCGACGaCGUGCgGCAgcagguccUCGCc -3'
miRNA:   3'- uacUUGGAGCUGCgGCGCG-UGU--------AGCG- -5'
26400 3' -55.9 NC_005345.2 + 46510 0.66 0.613969
Target:  5'- -cGAGCUUUGACccggucaguCCGCGCcgcucCAUCGCg -3'
miRNA:   3'- uaCUUGGAGCUGc--------GGCGCGu----GUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 39028 0.66 0.613969
Target:  5'- cUGuACCUCGGggauggggcaguCGUCGCGCAUGUgcCGCu -3'
miRNA:   3'- uACuUGGAGCU------------GCGGCGCGUGUA--GCG- -5'
26400 3' -55.9 NC_005345.2 + 35638 0.66 0.613969
Target:  5'- -aGAACacgaUCGAcgggugcuCGCCGCGC-CAcCGCa -3'
miRNA:   3'- uaCUUGg---AGCU--------GCGGCGCGuGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 1709 0.66 0.613969
Target:  5'- uUGGGCCggcgaGACGaCCGacCGCuCGUCGCa -3'
miRNA:   3'- uACUUGGag---CUGC-GGC--GCGuGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 34957 0.66 0.613969
Target:  5'- -gGAcACCUCGGCGgCGUcCugGUCGUc -3'
miRNA:   3'- uaCU-UGGAGCUGCgGCGcGugUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.