miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26401 3' -59.1 NC_005345.2 + 18013 0.66 0.467012
Target:  5'- gAC-CgCCUGuCGGACGCcgggcgaGCGCAGGAa -3'
miRNA:   3'- -UGaG-GGAC-GCCUGCGag-----CGCGUCUUg -5'
26401 3' -59.1 NC_005345.2 + 31301 0.66 0.467012
Target:  5'- gAUUCCC-GcCGGGCGCUgcUGCGCGGu-- -3'
miRNA:   3'- -UGAGGGaC-GCCUGCGA--GCGCGUCuug -5'
26401 3' -59.1 NC_005345.2 + 46406 0.66 0.467012
Target:  5'- cGCUCCacaUGCGGGcCGCUgucaucgccgggCGgGCGGGAg -3'
miRNA:   3'- -UGAGGg--ACGCCU-GCGA------------GCgCGUCUUg -5'
26401 3' -59.1 NC_005345.2 + 19231 0.66 0.447369
Target:  5'- uGCgCCUUGaacgugaGGuucgGCUCGCGCAGGACc -3'
miRNA:   3'- -UGaGGGACg------CCug--CGAGCGCGUCUUG- -5'
26401 3' -59.1 NC_005345.2 + 42813 0.66 0.43772
Target:  5'- cGCUCgugCCguaCGaGACGCUCGUGCAGuACu -3'
miRNA:   3'- -UGAG---GGac-GC-CUGCGAGCGCGUCuUG- -5'
26401 3' -59.1 NC_005345.2 + 23729 0.67 0.428192
Target:  5'- cGCUUCCUgGCGGGaagagCGgGCAGAGCu -3'
miRNA:   3'- -UGAGGGA-CGCCUgcga-GCgCGUCUUG- -5'
26401 3' -59.1 NC_005345.2 + 9549 0.67 0.40951
Target:  5'- --aCCCggagaucggGCGGACGUgccgcaaCGCGCGGAAg -3'
miRNA:   3'- ugaGGGa--------CGCCUGCGa------GCGCGUCUUg -5'
26401 3' -59.1 NC_005345.2 + 3874 0.67 0.391344
Target:  5'- gGCgUCCCUGCGcugcucuccgccGACGCUCGCaGUgugGGggUg -3'
miRNA:   3'- -UG-AGGGACGC------------CUGCGAGCG-CG---UCuuG- -5'
26401 3' -59.1 NC_005345.2 + 32763 0.67 0.391344
Target:  5'- uGC-CCCUcaUGGugGCg-GCGCAGAGCg -3'
miRNA:   3'- -UGaGGGAc-GCCugCGagCGCGUCUUG- -5'
26401 3' -59.1 NC_005345.2 + 33140 0.68 0.340098
Target:  5'- --aCCCUcGCGGGC-CUCGgGCAGcACg -3'
miRNA:   3'- ugaGGGA-CGCCUGcGAGCgCGUCuUG- -5'
26401 3' -59.1 NC_005345.2 + 14856 0.69 0.308729
Target:  5'- gGCUgCa-GCGGGCGCUCGaCGCGGccgaGGCg -3'
miRNA:   3'- -UGAgGgaCGCCUGCGAGC-GCGUC----UUG- -5'
26401 3' -59.1 NC_005345.2 + 22614 0.69 0.30124
Target:  5'- cGCUgCgCCUGCGGugguuccgGCGCUCGUGCcGggUg -3'
miRNA:   3'- -UGA-G-GGACGCC--------UGCGAGCGCGuCuuG- -5'
26401 3' -59.1 NC_005345.2 + 46878 0.69 0.286684
Target:  5'- aAC-CCCUGCGGACGa--GCGCaccgAGAAUc -3'
miRNA:   3'- -UGaGGGACGCCUGCgagCGCG----UCUUG- -5'
26401 3' -59.1 NC_005345.2 + 46536 0.69 0.286684
Target:  5'- cGCUCCaucgcgCUGCGGAUugGCUUGCcguggucuuuGCGGAGCa -3'
miRNA:   3'- -UGAGG------GACGCCUG--CGAGCG----------CGUCUUG- -5'
26401 3' -59.1 NC_005345.2 + 41856 0.7 0.272688
Target:  5'- gGCUCguCCUGCGGuuCGCcucggcgaUCGCGCGGGcgGCg -3'
miRNA:   3'- -UGAG--GGACGCCu-GCG--------AGCGCGUCU--UG- -5'
26401 3' -59.1 NC_005345.2 + 21984 0.71 0.233989
Target:  5'- cCUCCUccgGCgGGACGC-CGCGCAGcGCc -3'
miRNA:   3'- uGAGGGa--CG-CCUGCGaGCGCGUCuUG- -5'
26401 3' -59.1 NC_005345.2 + 22662 0.71 0.210833
Target:  5'- ---aCCUGCGGACGgUCGgGCAGucGCu -3'
miRNA:   3'- ugagGGACGCCUGCgAGCgCGUCu-UG- -5'
26401 3' -59.1 NC_005345.2 + 38993 0.8 0.055533
Target:  5'- uGCUUgCgGCGGGCGCUC-CGCAGAGCg -3'
miRNA:   3'- -UGAGgGaCGCCUGCGAGcGCGUCUUG- -5'
26401 3' -59.1 NC_005345.2 + 3337 0.8 0.049485
Target:  5'- cACUCgggCUGCGGGCGCcgcguucgaUCGCGCGGAGCa -3'
miRNA:   3'- -UGAGg--GACGCCUGCG---------AGCGCGUCUUG- -5'
26401 3' -59.1 NC_005345.2 + 33771 1.09 0.000311
Target:  5'- gACUCCCUGCGGACGCUCGCGCAGAACg -3'
miRNA:   3'- -UGAGGGACGCCUGCGAGCGCGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.