miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26401 5' -55.6 NC_005345.2 + 2965 0.66 0.685619
Target:  5'- -aGGUCGuuCGCGCCGUacuuGUAGGcGAUAc -3'
miRNA:   3'- cgCCAGUu-GCGCGGCG----CAUUC-CUGUa -5'
26401 5' -55.6 NC_005345.2 + 38014 0.66 0.685619
Target:  5'- cGUGGUCAcUGgugGCCGCGU--GGACGUc -3'
miRNA:   3'- -CGCCAGUuGCg--CGGCGCAuuCCUGUA- -5'
26401 5' -55.6 NC_005345.2 + 6688 0.66 0.684521
Target:  5'- aCGGccUCGGCGUcgauaucGCCGCGcgUGGGGACGc -3'
miRNA:   3'- cGCC--AGUUGCG-------CGGCGC--AUUCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 45842 0.66 0.674621
Target:  5'- gGCGG-CGGCGCGggcgaCGauCGUGGGGGCGg -3'
miRNA:   3'- -CGCCaGUUGCGCg----GC--GCAUUCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 30832 0.66 0.656943
Target:  5'- cGCGG-CGugGCugcagcagaacacugGCCGCG--AGGACAc -3'
miRNA:   3'- -CGCCaGUugCG---------------CGGCGCauUCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 36504 0.66 0.652512
Target:  5'- gGCGGcCGAcCGCGCCccggcgaacugGCGUGgguGGGCGa -3'
miRNA:   3'- -CGCCaGUU-GCGCGG-----------CGCAUu--CCUGUa -5'
26401 5' -55.6 NC_005345.2 + 23964 0.66 0.652512
Target:  5'- cGCGGgcugCuguCGCgGCCGCGaggcuGGGGCAa -3'
miRNA:   3'- -CGCCa---Guu-GCG-CGGCGCau---UCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 27753 0.66 0.641424
Target:  5'- aGCGGUacucguCGCGCUGC---AGGACGa -3'
miRNA:   3'- -CGCCAguu---GCGCGGCGcauUCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 5143 0.67 0.619232
Target:  5'- gGCGaUCAggaggaACGCGCCGCGgcGGccGACGa -3'
miRNA:   3'- -CGCcAGU------UGCGCGGCGCauUC--CUGUa -5'
26401 5' -55.6 NC_005345.2 + 11196 0.67 0.619232
Target:  5'- cUGGUCGACGCcgGCCuGUGgcAcGGGCAUg -3'
miRNA:   3'- cGCCAGUUGCG--CGG-CGCauU-CCUGUA- -5'
26401 5' -55.6 NC_005345.2 + 24853 0.67 0.608148
Target:  5'- aGCGGUCc---CGCgGCGUGAcGGACGc -3'
miRNA:   3'- -CGCCAGuugcGCGgCGCAUU-CCUGUa -5'
26401 5' -55.6 NC_005345.2 + 7624 0.67 0.597086
Target:  5'- -aGGUCGccgagacgcucGCGCuCCGCGUucGGGACGg -3'
miRNA:   3'- cgCCAGU-----------UGCGcGGCGCAu-UCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 30223 0.67 0.57506
Target:  5'- --cGUCGACGCcgacgcgaGCCGCG--AGGACAUg -3'
miRNA:   3'- cgcCAGUUGCG--------CGGCGCauUCCUGUA- -5'
26401 5' -55.6 NC_005345.2 + 30033 0.67 0.57506
Target:  5'- aGCGGaUCGGCGCcCaCGCGUGGGccGACGa -3'
miRNA:   3'- -CGCC-AGUUGCGcG-GCGCAUUC--CUGUa -5'
26401 5' -55.6 NC_005345.2 + 41464 0.67 0.57506
Target:  5'- uCGGUacCGGCGgGCUGCGcUGGGGGCu- -3'
miRNA:   3'- cGCCA--GUUGCgCGGCGC-AUUCCUGua -5'
26401 5' -55.6 NC_005345.2 + 25825 0.67 0.564115
Target:  5'- uGCucGUCGGCGCGCacccgaCGCGgaccGAGGACAa -3'
miRNA:   3'- -CGc-CAGUUGCGCG------GCGCa---UUCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 12774 0.67 0.564115
Target:  5'- cGCGGcCGcggaGCGCGcCCGCGUAcGcGGCGa -3'
miRNA:   3'- -CGCCaGU----UGCGC-GGCGCAUuC-CUGUa -5'
26401 5' -55.6 NC_005345.2 + 8830 0.68 0.554311
Target:  5'- cGCGGUgAACGCGUCGuCGaugacgaugcauucgAGGGACu- -3'
miRNA:   3'- -CGCCAgUUGCGCGGC-GCa--------------UUCCUGua -5'
26401 5' -55.6 NC_005345.2 + 736 0.68 0.542399
Target:  5'- cGCcGUCGACGUGCCGCucgcgGUGcucguGGGAUAg -3'
miRNA:   3'- -CGcCAGUUGCGCGGCG-----CAU-----UCCUGUa -5'
26401 5' -55.6 NC_005345.2 + 31285 0.68 0.542399
Target:  5'- gGCGGgu-GCGCGCCaCGggGGGAUGUc -3'
miRNA:   3'- -CGCCaguUGCGCGGcGCauUCCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.